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20002020
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Research Output 2000 2020

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Article
2020

Adjustment of Modified Carbapenem Inactivation Method Conditions for Rapid Detection of Carbapenemase-Producing Acinetobacter baumannii

Vu, T. N., Byun, J. H., D'Souza, R., Pinto, N. A., Nguyen, L. P., Yong, D. & Chong, Y., 2020 Jan 1, In : Annals of laboratory medicine. 40, 1, p. 21-26 6 p.

Research output: Contribution to journalArticle

Open Access
Acinetobacter baumannii
Carbapenems
meropenem
Gene encoding
carbapenemase
Anaerobic Bacteria
Mass Spectrometry
Lasers
Clostridium perfringens
Bacteroides
2019
2 Citations (Scopus)
Open Access
Bacterial Genomes
Ionization
Mass spectrometry
Desorption
Mass Spectrometry
2 Citations (Scopus)

Chinese liver fluke Clonorchis sinensis infection changes the gut microbiome and increases probiotic Lactobacillus in mice

Kim, J. Y., Kim, E. M., Yi, M. H., Lee, J., Lee, S., Hwang, Y., Yong, D., Sohn, W. M. & Yong, T. S., 2019 Feb 14, In : Parasitology Research. 118, 2, p. 693-699 7 p.

Research output: Contribution to journalArticle

Clonorchis sinensis
liver flukes
Fasciola hepatica
Probiotics
Lactobacillus
3 Citations (Scopus)

Comparative microbiome analysis of Dermatophagoides farinae, Dermatophagoides pteronyssinus, and Tyrophagus putrescentiae

Lee, J., Kim, J. Y., Yi, M. H., Hwang, Y., Lee, I. Y., Nam, S. H., Yong, D. & Yong, T. S., 2019 Apr, In : Journal of Allergy and Clinical Immunology. 143, 4, p. 1620-1623 4 p.

Research output: Contribution to journalArticle

Dermatophagoides farinae
Dermatophagoides pteronyssinus
Microbiota
3 Citations (Scopus)
Open Access
Acinetobacter baumannii
Carbapenems
Bacteriophages
Larva
Pneumonia

First Case of Trueperella bernardiae Bacteremia in an Immunocompromised Patient in Korea

Roh, J., Kim, M., Kim, D., Yong, D. & Lee, K., 2019 Nov 1, In : Annals of laboratory medicine. 39, 6, p. 593-595 3 p.

Research output: Contribution to journalArticle

Open Access
Immunocompromised Host
Korea
Bacteremia

In vivo efficacy of combination of colistin with fosfomycin or minocycline in a mouse model of multidrug-resistant Acinetobacter baumannii pneumonia

Ku, N. S., Lee, S. H., Lim, Y. S., Choi, H., Ahn, J. Y., Jeong, S. J., Shin, S. J., Choi, J. Y., Choi, Y. H., Yeom, J. S., Yong, D., Song, Y. G. & Kim, J. M., 2019 Dec 1, In : Scientific reports. 9, 1, 17127.

Research output: Contribution to journalArticle

Open Access
Fosfomycin
Colistin
Acinetobacter baumannii
Minocycline
Pneumonia

Modification and evaluation of the Triton Hodge test for screening carbapenemase-producing Enterobacteriaceae

Byun, J. H., Gim, J. L., Yum, J. H., Yong, D., Lee, K. & Chong, Y., 2019 Dec, In : Diagnostic Microbiology and Infectious Disease. 95, 4, 114872.

Research output: Contribution to journalArticle

Enterobacteriaceae
Agar
Enzymes
Suspensions
carbapenemase

Network Integrative Genomic and Transcriptomic Analysis of Carbapenem-Resistant Klebsiella pneumoniae Strains Identifies Genes for Antibiotic Resistance and Virulence

Lee, M., Pinto, N. A., Kim, C. Y., Yang, S., D’Souza, R., Yong, D. & Leea, I., 2019 Jul, In : mSystems. 4, 4, e00202-19.

Research output: Contribution to journalArticle

Open Access
carbapenems
Carbapenems
pneumonia
antibiotic resistance
Klebsiella pneumoniae

Phenotypic and genotypic characterization of Acinetobacter spp. panel strains: A cornerstone to facilitate antimicrobial development

D'Souza, R., Pinto, N. A., Le Phuong, N., Higgins, P. G., Vu, T. N., Byun, J. H., Cho, Y. L., Choi, J. R. & Yong, D., 2019 Jan 1, In : Frontiers in Microbiology. 10, MAR, 559.

Research output: Contribution to journalArticle

Open Access
Acinetobacter
Phenotype
Carbapenems
Anti-Bacterial Agents
Porins

Resistome profiles, plasmid typing, and whole-genome phylogenetic tree analyses of blaNDM-9 and mcr-1 co-harboring escherichia coli ST617 from a patient without a history of farm exposure in Korea

Nguyen, L. P., Pinto, N. A., Vu, T. N., Mai, H., Pham, A. H. T., Lee, H., Cho, Y. L., Byun, J. H., D’souza, R. & Yong, D., 2019 Dec, In : Pathogens. 8, 4, 212.

Research output: Contribution to journalArticle

Open Access
Korea
Colistin
Plasmids
meropenem
Genome
3 Citations (Scopus)

Risk factors for Elizabethkingia acquisition and clinical characteristics of patients, South Korea

Choi, M. H., Kim, M., Jeong, S. J., Choi, J. Y., Lee, I. Y., Yong, T. S., Yong, D., Jeong, S. H. & Lee, K., 2019 Jan, In : Emerging infectious diseases. 25, 1, p. 42-51 10 p.

Research output: Contribution to journalArticle

Republic of Korea
Incidence
Propensity Score
Infection
Culicidae

Septicemia Caused by Herbaspirillum huttiense Secondary to Pneumonia

Liu, C., Kwon, M. J., Kim, M., Byun, J. H., Yong, D. & Lee, K., 2019 May 1, In : Annals of laboratory medicine. 39, 3, p. 340-342 3 p.

Research output: Contribution to journalArticle

Open Access
Herbaspirillum
16S Ribosomal RNA
Matrix-Assisted Laser Desorption-Ionization Mass Spectrometry
Immunocompromised Host
Microbial Sensitivity Tests
Open Access
pneumonia
Galleria mellonella
bacteriophage
Pseudomonas Phages
Pseudomonas aeruginosa

Vertical capacitance aptasensors for real-time monitoring of bacterial growth and antibiotic susceptibility in blood

Song, J. H., Lee, S. M., Park, I. H., Yong, D., Lee, K. S., Shin, J. S. & Yoo, K. H., 2019 Oct 15, In : Biosensors and Bioelectronics. 143, 111623.

Research output: Contribution to journalArticle

Antibiotics
Blood
Capacitance
Anti-Bacterial Agents
Monitoring
2018

Acquisition of Carbapenemase-Producing Enterobacteriaceae in Solid Organ Transplantation Recipients

Lee, K. H., Han, S. H., Yong, D., Paik, H. C., Lee, J. G., Kim, M. S., Joo, D. J., Choi, J. S., Kim, S. I., Kim, Y. S., Park, M. S., Kim, S. Y., Yoon, Y. N., Kang, S., Jeong, S. J., Choi, J. Y., Song, Y. G. & Kim, J. M., 2018 Dec, In : Transplantation Proceedings. 50, 10, p. 3748-3755 8 p.

Research output: Contribution to journalArticle

Open Access
Organ Transplantation
Enterobacteriaceae
carbapenemase
Odds Ratio
Klebsiella pneumoniae
3 Citations (Scopus)

Comparison of lab-made electrostatic rod-type sampler with single stage viable impactor for identification of indoor airborne bacteria

Kim, H. R., Park, J. W., Kim, H. S., Yong, D. & Hwang, J., 2018 Jan, In : Journal of Aerosol Science. 115, p. 190-197 8 p.

Research output: Contribution to journalArticle

sampler
Electrostatics
Bacteria
bacterium
Sampling
3 Citations (Scopus)

Differences in colistin-resistant Acinetobacter baumannii clinical isolates between patients with and without prior colistin treatment

Park, Y. J., Hong, D. J., Yoon, E. J., Kim, D., Choi, M. H., Hong, J. S., Lee, H., Yong, D. & Jeong, S. H., 2018 Jan 1, In : Annals of laboratory medicine. 38, 6, p. 545-554 10 p.

Research output: Contribution to journalArticle

Colistin
Acinetobacter baumannii
Therapeutics
Lipid A
Population Characteristics
4 Citations (Scopus)
Fungemia
Bacteremia
Mass Spectrometry
Lasers
Length of Stay
5 Citations (Scopus)

Increasing incidence of listeriosis and infection-Associated clinical outcomes

Choi, M. H., Park, Y. J., Kim, M., Seo, Y. H., Kim, Y. A., Choi, J. Y., Yong, D., Jeong, S. H. & Lee, K., 2018 Jan 1, In : Annals of laboratory medicine. 38, 2, p. 102-109 8 p.

Research output: Contribution to journalArticle

Listeriosis
Listeria monocytogenes
Incidence
Infection
Mortality
4 Citations (Scopus)

Intestinal fluke Metagonimus yokogawai infection increases probiotic Lactobacillus in mouse cecum

Kim, J. Y., Kim, E. M., Yi, M. H., Lee, J., Lee, S., Hwang, Y., Yong, D., Sohn, W. M. & Yong, T. S., 2018 Oct, In : Experimental Parasitology. 193, p. 45-50 6 p.

Research output: Contribution to journalArticle

Heterophyidae
Trematoda
Cecum
Probiotics
Lactobacillus
1 Citation (Scopus)

Parabacteroides chongii sp. nov., isolated from blood of a patient with peritonitis

Kim, H., Im, W. T., Kim, M., Kim, D., Seo, Y. H., Yong, D., Jeong, S. H. & Lee, K., 2018 Oct 1, In : Journal of Microbiology. 56, 10, p. 722-726 5 p.

Research output: Contribution to journalArticle

Vitamin K 2
Quinones
Base Composition
Peritonitis
rRNA Genes

Recent increase in the incidence of TEM-135 β-lactamase-harboring Neisseria gonorrhoeae in Korea

Rim, J. H., Kim, H., Lee, H., Yong, D., Jeong, S. H. & Lee, K., 2018 Jan 1, In : Annals of laboratory medicine. 38, 4, p. 324-330 7 p.

Research output: Contribution to journalArticle

Neisseria gonorrhoeae
Korea
Penicillinase
Transmission electron microscopy
Incidence

Risk factors for mortality in patients with Pseudomonas aeruginosa pneumonia: Clinical impact of mucA gene mutation

Jung, I. Y., Jeong, S. J., Lee, K. M., Ahn, J. Y., Ku, N. S., Han, S. H., Choi, J. Y., Yong, D., Yoon, S. S., Song, Y. G., Jeong, S. H., Kim, J. M. & Lee, K., 2018 Jul, In : Respiratory Medicine. 140, p. 27-31 5 p.

Research output: Contribution to journalArticle

Pseudomonas aeruginosa
Pneumonia
Mutation
Mortality
Chronic Obstructive Pulmonary Disease
5 Citations (Scopus)
Bacteria
Blood
Testing
Turnaround time
Bottles

Urinary tract infection caused by a small colony variant form of capnophilic Escherichia coli leading to misidentification and non-reactions in antimicrobial susceptibility tests

Park, Y. J., Le Phuong, N., Pinto, N. A., Kwon, M. J., D'Souza, R., Byun, J. H., Sung, H. & Yong, D., 2018 Nov 20, In : Antimicrobial Resistance and Infection Control. 7, 1, 139.

Research output: Contribution to journalArticle

Urinary Tract Infections
Escherichia coli
Phenotype
Mass Spectrometry
Lasers
6 Citations (Scopus)

Utility of conventional culture and MALDI-TOF MS for identification of microbial communities in bronchoalveolar lavage fluid in comparison with the GS Junior next generation sequencing system

Sung, J. Y., Hwang, Y., Shin, M. H., Park, M. S., Lee, S. H., Yong, D. & Lee, K., 2018 Jan 1, In : Annals of laboratory medicine. 38, 2, p. 110-118 9 p.

Research output: Contribution to journalArticle

Microbiota
Bronchoalveolar Lavage Fluid
Ionization
Mass spectrometry
Desorption
2017
2 Citations (Scopus)

Assessment of indoor bioaerosols using a lab-made virtual impactor

Mohamadi Nasrabadi, A., Park, J. W., Kim, H. S., Han, J. S., Hyun, J., Yong, D. & Hwang, J., 2017 Feb 1, In : Aerosol Science and Technology. 51, 2, p. 159-167 9 p.

Research output: Contribution to journalArticle

Inlet flow
Aerosols
Particles (particulate matter)
Flow rate
Channel flow
7 Citations (Scopus)

Clinical and molecular characteristics of community-acquired Clostridium difficile infections in comparison with those of hospital-acquired C. difficile

Kwon, S. S., Gim, J. L., Kim, M. S., Kim, H., Choi, J. Y., Yong, D. & Lee, K., 2017 Dec, In : Anaerobe. 48, p. 42-46 5 p.

Research output: Contribution to journalArticle

Clostridium Infections
Clostridium difficile
Ribotyping
Polymerase Chain Reaction
Proton Pump Inhibitors
2 Citations (Scopus)
Candida
Korea
Microorganisms
Escherichia coli
Ionization
3 Citations (Scopus)
Gold
surface reactions
bacteria
Bacteria
chips
4 Citations (Scopus)

Development of a one-step multiplex PCR assay for differential detection of major Mycobacterium species

Chae, H., Han, S. J., Kim, S. Y., Ki, C. S., Huh, H. J., Yong, D., Koh, W. J. & Shin, S. J., 2017 Sep, In : Journal of Clinical Microbiology. 55, 9, p. 2736-2751 16 p.

Research output: Contribution to journalArticle

Multiplex Polymerase Chain Reaction
Mycobacterium
Mycobacterium tuberculosis
Genotype
Multilocus Sequence Typing
2 Citations (Scopus)

Evaluation of the cobas U 701 microscopy analyser compared with urine culture in screening for urinary tract infection

Kim, S. H., Song, S. A., Urm, S. H., Kook, J. K., Kim, H. R., Yong, D., Choi, J. & Shin, J. H., 2017 Aug 1, In : Journal of Medical Microbiology. 66, 8, p. 1110-1113 4 p.

Research output: Contribution to journalArticle

Urinary Tract Infections
Microscopy
Urine
Leukocytes
Bacteria
11 Citations (Scopus)

Fecal calprotectin level reflects the severity of Clostridium difficile infection

Kim, J., Kim, H., Oh, H. J., Kim, H. S., Hwang, Y. J., Yong, D., Jeong, S. H. & Lee, K., 2017 Jan, In : Annals of laboratory medicine. 37, 1, p. 53-57 5 p.

Research output: Contribution to journalArticle

Leukocyte L1 Antigen Complex
Clostridium Infections
Clostridium
Clostridium difficile
Biomarkers
2 Citations (Scopus)

First report of the carbapenemase gene blaOXA-499 in Acinetobacter pittii

D'Souza, R., Pinto, N. A., Higgins, P. G., Hwang, I., Yong, D., Choi, J., Lee, K. & Chong, Y., 2017 May, In : Antimicrobial agents and chemotherapy. 61, 5, e02676.

Research output: Contribution to journalArticle

Acinetobacter
Genes
Carbapenems
Organism Cloning
Chromosomes
5 Citations (Scopus)

Flavobacterium gilvum sp. nov., isolated from stream water

Shin, S. K., Ha, Y., Cho, Y. J., Kwon, S., Yong, D. & Yi, H., 2017 Jan, In : International Journal of Systematic and Evolutionary Microbiology. 67, 1, p. 153-157 5 p., 001594.

Research output: Contribution to journalArticle

Flavobacterium
Water
new species
water
relatedness
2 Citations (Scopus)

Genetic and biochemical characterisation of CTX-M-37 extended-spectrum β-lactamase from an Enterobacter cloacae clinical isolate from Mongolia

Lee, K., Yong, D., Jeong, S. H., Tulgaa, K., Docquier, J. D., Rossolini, G. M. & Chong, Y., 2017 Sep, In : Journal of Global Antimicrobial Resistance. 10, p. 3-7 5 p.

Research output: Contribution to journalArticle

Mongolia
Enterobacter cloacae
Molecular Biology
Cefotaxime
Microbial Sensitivity Tests
2 Citations (Scopus)

In vitro activity of tigecycline alone and antimicrobial combinations against clinical Neisseria gonorrhoeae isolates

Lee, H., Kim, H., Seo, Y. H., Yong, D., Jeong, S., Lee, K. & Chong, Y., 2017 Feb 1, In : Diagnostic Microbiology and Infectious Disease. 87, 2, p. 160-162 3 p.

Research output: Contribution to journalArticle

Ceftriaxone
Neisseria gonorrhoeae
Cefixime
Doxycycline
Spectinomycin

MALDI-TOF-MS fingerprinting provides evidence of urosepsis caused by Aerococcus urinae

Kim, J., Hong, S. K., Kim, M., Yong, D. & Lee, K., 2017 Jan 1, In : Infection and Chemotherapy. 49, 3, p. 227-229 3 p.

Research output: Contribution to journalArticle

Aerococcus
Peptide Mapping
Matrix-Assisted Laser Desorption-Ionization Mass Spectrometry
Urinary Tract Infections
Mass Spectrometry
8 Citations (Scopus)

Molecular epidemiology and resistome analysis of multidrug-resistant ST11 Klebsiella pneumoniae strain containing multiple copies of extended-spectrum β-lactamase genes using whole-genome sequencing

Souza, R. D., Pinto, N. A., Hwang, I., Younjee, H., Cho, Y. L., Kim, H., Yong, D., Choi, J., Lee, K. & Chong, Y., 2017 Jan, In : New Microbiologica. 40, 1, p. 38-44 7 p.

Research output: Contribution to journalArticle

Molecular Epidemiology
Klebsiella pneumoniae
Genome
Genes
Bacterial Genomes
4 Citations (Scopus)

Panel strain of Klebsiella pneumoniae for beta-lactam antibiotic evaluation: Their phenotypic and genotypic characterization

Dsouza, R., Pinto, N. A., Hwang, I. S., Cho, Y. L., Yong, D., Choi, J., Lee, K. & Chong, Y., 2017 Jan 1, In : PeerJ. 2017, 1, e2896.

Research output: Contribution to journalArticle

beta-lactam antibiotics
Klebsiella pneumoniae
beta-Lactams
Anti-Bacterial Agents
Pharmaceutical Preparations
5 Citations (Scopus)

Prevalence of Clostridium perfringens toxin in patients suspected of having antibiotic-associated diarrhea

Kim, Y. J., Kim, S. H., Ahn, J., Cho, S., Kim, D., Kim, K., Lee, H., Son, H., Lee, H. J., Yong, D., Choi, J., Kim, H. R. & Shin, J. H., 2017 Dec 1, In : Anaerobe. 48, p. 34-36 3 p.

Research output: Contribution to journalArticle

Clostridium perfringens
Diarrhea
Anti-Bacterial Agents
Korea
Microbiology
32 Citations (Scopus)

Relative prevalence and antimicrobial susceptibility of clinical isolates of Elizabethkingia species based on 16S rRNA gene sequencing

Han, M. S., Kim, H., Lee, Y., Kim, M., Ku, N. S., Choi, J. Y., Yong, D., Jeong, S. H., Lee, K. & Chong, Y., 2017 Jan, In : Journal of Clinical Microbiology. 55, 1, p. 274-280 7 p.

Research output: Contribution to journalArticle

rRNA Genes
Republic of Korea
Matrix-Assisted Laser Desorption-Ionization Mass Spectrometry
Fluoroquinolones
Rifampin
4 Citations (Scopus)

The impact of production of extended-spectrum β-lactamases on the 28-day mortality rate of patients with Proteus mirabilis bacteremia in Korea

Ahn, J. Y., Ann, H. W., Jeon, Y., Ahn, M. Y., Oh, D. H., Kim, Y. C., Kim, E. J., Song, J. E., Jung, I. Y., Kim, M. H., Jeong, W., Ku, N. S., Jeong, S. J., Choi, J., Yong, D., Song, Y. G. & Kim, J. M., 2017 May 3, In : BMC Infectious Diseases. 17, 1, 327.

Research output: Contribution to journalArticle

Proteus mirabilis
Korea
Bacteremia
Mortality
Multivariate Analysis
2 Citations (Scopus)

Whole genome and transcriptome analysis reveal MALDI-TOF MS and SDS-PAGE have limited performance for the detection of the key outer membrane protein in carbapenem-resistant Klebsiella pneumoniae isolates

Pinto, N. A., D'Souza, R., Hwang, I. S., Choi, J., In, Y. H., Park, H. S., Ryu, C. M., Yong, D. & Lee, K., 2017 Oct 17, In : Oncotarget. 8, 49, p. 84818-84826 9 p.

Research output: Contribution to journalArticle

Carbapenems
Matrix-Assisted Laser Desorption-Ionization Mass Spectrometry
Klebsiella pneumoniae
Gene Expression Profiling
Polyacrylamide Gel Electrophoresis
2016
11 Citations (Scopus)

Anaerobic bacteremia: Impact of inappropriate therapy on mortality

Kim, J., Lee, Y., Park, Y., Kim, M., Choi, J. Y., Yong, D., Jeong, S. H. & Lee, K., 2016 Jan 1, In : Infection and Chemotherapy. 48, 2, p. 91-98 8 p.

Research output: Contribution to journalArticle

Bacteremia
Mortality
Therapeutics
Anaerobic Bacteria
Incidence
4 Citations (Scopus)

Burkholderia sepsis in children as a hospital-acquired infection

Kim, K. Y., Yong, D., Lee, K., Kim, H. S. & Kim, D. S., 2016 Jan, In : Yonsei medical journal. 57, 1, p. 97-102 6 p.

Research output: Contribution to journalArticle

Burkholderia
Burkholderia cepacia
Cross Infection
Sepsis
Burkholderia Infections
12 Citations (Scopus)

Characterization and complete genome sequence analysis of two Myoviral bacteriophages infecting clinical carbapenem-resistant Acinetobacter baumannii isolates

Jeon, J., D'Souza, R., Pinto, N., Ryu, C. M., Park, J., Yong, D. & Lee, K., 2016 Jul 1, In : Journal of Applied Microbiology. 121, 1, p. 68-77 10 p.

Research output: Contribution to journalArticle

Acinetobacter baumannii
Carbapenems
Bacteriophages
Sequence Analysis
Genome
30 Citations (Scopus)

Characterization of microbiome in bronchoalveolar lavage fluid of patients with lung cancer comparing with benign mass like lesions

Lee, S. H., Sung, J. Y., Yong, D., Chun, J., Kim, S. Y., Song, J. H., Chung, K. S., Kim, E. Y., Jung, J. Y., kang, Y., Kim, Y. S., Kim, S. K., Chang, J. & Park, M. S., 2016 Dec 1, In : Lung Cancer. 102, p. 89-95 7 p.

Research output: Contribution to journalArticle

Microbiota
Bronchoalveolar Lavage Fluid
Lung Neoplasms
Megasphaera
Veillonella