• 4482 Citations
  • 37 h-Index
1996 …2096

Research output per year

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Research Output

2096

Characterization of bacteria that cause "bacterial shoot blight of pear" in Japan

Beer, S. V., Kim, J. H., Zumoff, C. H., Bogdanove, A. J., Laby, R. J., Gustafson, H. L., Momol, T., Aldwinckle, H. S., Tanii, A. & Tamura, O., 2096 Apr 1, In : Acta Horticulturae. 411, 1, p. 179-181 3 p.

Research output: Contribution to journalArticle

33 Citations (Scopus)
2019

Makes caterpillars floppy-like effector-containing MARTX toxins require host ADP-ribosylation factor (ARF) proteins for systemic pathogenicity

Lee, Y., Kim, B. S., Choi, S., Lee, E. Y., Park, S., Hwang, J., Kwon, Y., Hyun, J., Lee, C., Kim, J. F., Eom, S. H. & Kima, M. H., 2019 Sep 3, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 36, p. 18031-18040 10 p.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)
2018

Author correction: Rhizosphere microbiome structure alters to enable wilt resistance in tomato (Nat. Biotechnol., (2018) 36, 11, (1100-1116), 10.1038/nbt.4232)

Kwak, M. J., Kong, H. G., Choi, K., Kwon, S. K., Song, J. Y., Lee, J., Lee, P. A., Choi, S. Y., Seo, M., Lee, H. J., Jung, E. J., Park, H., Roy, N., Kim, H., Lee, M. M., Rubin, E. M., Lee, S. W. & Kim, J. F., 2018 Nov 9, In : Nature Biotechnology. 36, 11, 1 p.

Research output: Contribution to journalComment/debate

9 Citations (Scopus)

Rhizosphere microbiome structure alters to enable wilt resistance in tomato

Kwak, M. J., Kong, H. G., Choi, K., Kwon, S. K., Song, J. Y., Lee, J., Lee, P. A., Choi, S. Y., Seo, M., Lee, H. J., Jung, E. J., Park, H., Roy, N., Kim, H., Lee, M. M., Rubin, E. M., Lee, S. W. & Kim, J. F., 2018 Dec 1, In : Nature Biotechnology. 36, 11, p. 1100-1116 17 p.

Research output: Contribution to journalArticle

66 Citations (Scopus)
2017

Complete genome sequence of the sand-sediment actinobacterium Nocardioides dokdonensis FR1436T

Kwak, M. J., Kwon, S. K. & Kim, J. F., 2017 Jul 25, In : Standards in Genomic Sciences. 12, 1, 44.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Genome characteristics of the proteorhodopsin-containing marine flavobacterium Polaribacter dokdonensis DSW-5

Yoon, K., Song, J. Y., Kwak, M. J., Kwon, S. K. & Kim, J. F., 2017 Jul 1, In : Journal of Microbiology. 55, 7, p. 561-567 7 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Genome information of maribacter dokdonensis DSW-8 and comparative analysis with other maribacter genomes

Kwak, M. J., Lee, J., Kwon, S. K. & Kim, J. F., 2017 Mar, In : Journal of microbiology and biotechnology. 27, 3, p. 591-597 7 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Genomic and transcriptomic landscape of Escherichia coli BL21(DE3)

Kim, S., Jeong, H., Kim, E. Y., Kim, J. F., Lee, S. Y. & Yoon, S. H., 2017 May 19, In : Nucleic acids research. 45, 9, p. 5285-5293 9 p.

Research output: Contribution to journalArticle

17 Citations (Scopus)

Gut-Specific Delivery of T-Helper 17 Cells Reduces Obesity and Insulin Resistance in Mice

Hong, C. P., Park, A., Yang, B. G., Yun, C. H., Kwak, M. J., Lee, G. W., Kim, J. H., Jang, M. S., Lee, E. J., Jeun, E. J., You, G., Kim, K. S., Choi, Y., Park, J. H., Hwang, D., Im, S. H., Kim, J. F., Kim, Y. K., Seoh, J. Y., Surh, C. D. & 2 others, Kim, Y. M. & Jang, M. H., 2017 Jun, In : Gastroenterology. 152, 8, p. 1998-2010 13 p.

Research output: Contribution to journalArticle

24 Citations (Scopus)

Tunable Control of an Escherichia coli Expression System for the Overproduction of Membrane Proteins by Titrated Expression of a Mutant lac Repressor

Kim, S. K., Lee, D. H., Kim, O. C., Kim, J. F. & Yoon, S. H., 2017 Sep 15, In : ACS Synthetic Biology. 6, 9, p. 1766-1773 8 p.

Research output: Contribution to journalArticle

7 Citations (Scopus)
2016

Complete genome sequence of Streptomyces venezuelae ATCC 15439, a promising cell factory for production of secondary metabolites

Song, J. Y., Yoo, Y. J., Lim, S. K., Cha, S. H., Kim, J. E., Roe, J. H., Kim, J. F. & Yoon, Y. J., 2016 Feb 10, In : Journal of Biotechnology. 219, p. 57-58 2 p.

Research output: Contribution to journalArticle

11 Citations (Scopus)
3 Citations (Scopus)

Crystal structure and functional characterization of a light-driven chloride pump having an NTQ motif

Kim, K., Kwon, S. K., Jun, S. H., Cha, J. S., Kim, H., Lee, W., Kim, J. F. & Cho, H. S., 2016 Aug 24, In : Nature communications. 7, 12677.

Research output: Contribution to journalArticle

21 Citations (Scopus)

Does the intestinal microbial community of Korean Crohn's disease patients differ from that of western patients?

Eun, C. S., Kwak, M. J., Han, D. S., Lee, A. R., Park, D. I., Yang, S. K., Kim, Y. S. & Kim, J. F., 2016 Feb 29, In : BMC Gastroenterology. 16, 1, 28.

Research output: Contribution to journalArticle

13 Citations (Scopus)

Evolutionary architecture of the infant-adapted group of Bifidobacterium species associated with the probiotic function

Kwak, M. J., Kwon, S. K., Yoon, J. K., Song, J. Y., Seo, J. G., Chung, M. J. & Kim, J. F., 2016 Oct 1, In : Systematic and Applied Microbiology. 39, 7, p. 429-439 11 p.

Research output: Contribution to journalArticle

10 Citations (Scopus)

Genome sequence of Escherichia coli NCCP15653, a group D strain isolated from a diarrhea patient

Kwak, M. J., Kim, M. S., Kwon, S. K., Cho, S. H. & Kim, J. F., 2016 Feb 23, In : Gut Pathogens. 8, 1, 84.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Genome sequence of Porphyrobacter dokdonensis DSW-74T, isolated from seawater offDokdo in the East Sea (Sea of Korea)

Song, J. Y., Hong, J., Kwak, M. J., Kwon, S. K. & Kim, J. F., 2016, In : Genome Announcements. 4, 5, e00903-16.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Genome sequence of the marine flavobacterium Croceitalea dokdonensis DOKDO 023 that contains proton- and sodium-pumping rhodopsins

Kwon, S. K., Lee, H. G., Kwak, M. J. & Kim, J. F., 2016 Apr 1, In : Marine Genomics. 26, p. 1-3 3 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Microbial and biochemical basis of a Fusarium wilt-suppressive soil

Cha, J. Y., Han, S., Hong, H. J., Cho, H., Kim, D., Kwon, Y., Kwon, S. K., Crusemann, M., Bok Lee, Y., Kim, J. F., Giaever, G., Nislow, C., Moore, B. S., Thomashow, L. S., Weller, D. M. & Kwak, Y. S., 2016 Jan 1, In : ISME Journal. 10, 1, p. 119-129 11 p.

Research output: Contribution to journalArticle

113 Citations (Scopus)
2015
27 Citations (Scopus)

Complete genome sequence of Bifidobacterium longum KCTC 12200BP, a probiotic strain promoting the intestinal health

Kwon, S. K., Kwak, M. J., Seo, J. G., Chung, M. J. & Kim, J. F., 2015 Nov 20, In : Journal of Biotechnology. 214, p. 169-170 2 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)

Complete genome sequence of the probiotic bacterium Bifidobacterium breve KCTC 12201BP isolated from a healthy infant

Kwak, M. J., Yoon, J. K., Kwon, S. K., Chung, M. J., Seo, J. G. & Kim, J. F., 2015 Nov 20, In : Journal of Biotechnology. 214, p. 156-157 2 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Genome sequence of Lysobacter dokdonensis DS-58T, a gliding bacterium isolated from soil in Dokdo, Korea

Kwak, M. J., Kwon, S. K., Yoon, J. H. & Kim, J. F., 2015 Dec 9, In : Standards in Genomic Sciences. 10, 1, 123.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Genome sequences of the Shiga-like toxin-producing Escherichia coli nccp15655 and nccp15656

Kwak, M. J., Kwon, S. K., Cho, S. H. & Kim, J. F., 2015 May 12, In : Gut Pathogens. 7, 13.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Growth retardation of Escherichia coli by artificial increase of intracellular ATP

Na, Y. A., Lee, J. Y., Bang, W. J., Lee, H. J., Choi, S. I., Kwon, S. K., Jung, K. H., Kim, J. F. & Kim, P., 2015 Jun 1, In : Journal of Industrial Microbiology and Biotechnology. 42, 6, p. 915-924 10 p.

Research output: Contribution to journalArticle

14 Citations (Scopus)

PAIDB v2.0: Exploration and analysis of pathogenicity and resistance islands

Yoon, S. H., Park, Y. K. & Kim, J. F., 2015 Jan 28, In : Nucleic acids research. 43, D1, p. D624-D630

Research output: Contribution to journalArticle

38 Citations (Scopus)
2014

Differences in gastric mucosal microbiota profiling in patients with chronic gastritis, intestinal metaplasia, and gastric cancer using pyrosequencing methods

Eun, C. S., Kim, B. K., Han, D. S., Kim, S. Y., Kim, K. M., Choi, B. Y., Song, K. S., Kim, Y. S. & Kim, J. F., 2014 Dec 1, In : Helicobacter. 19, 6, p. 407-416 10 p.

Research output: Contribution to journalArticle

90 Citations (Scopus)

Genome information of Methylobacterium oryzae, a plant-probiotic methylotroph in the phyllosphere

Kwak, M. J., Jeong, H., Madhaiyan, M., Lee, Y., Sa, T. M., Oh, T. K. & Kim, J. F., 2014 Sep 11, In : PloS one. 9, 9, e106704.

Research output: Contribution to journalArticle

29 Citations (Scopus)

Sulfitobacter geojensis sp. nov., Sulfitobacter noctilucae sp. nov., and Sulfitobacter noctilucicola sp. nov., Isolated from coastal seawater

Kwak, M. J., Lee, J. S., Lee, K. C., Kim, K. K., Eom, M. K., Kim, B. K. & Kim, J. F., 2014 Nov 1, In : International Journal of Systematic and Evolutionary Microbiology. 64, p. 3760-3767 8 p.

Research output: Contribution to journalArticle

18 Citations (Scopus)
2013

An expansin from the marine bacterium Hahella chejuensis acts synergistically with xylanase and enhances xylan hydrolysis

Lee, H. J., Kim, I. J., Kim, J. F., Choi, I. G. & Kim, K. H., 2013 Dec, In : Bioresource technology. 149, 1 p.

Research output: Contribution to journalArticle

17 Citations (Scopus)

Charting microbial phenotypes in multiplex nanoliter batch bioreactors

Dai, J., Yoon, S. H., Sim, H. Y., Yang, Y. S., Oh, T. K., Kim, J. F. & Hong, J. W., 2013 Jun 18, In : Analytical Chemistry. 85, 12, p. 5892-5899 8 p.

Research output: Contribution to journalArticle

35 Citations (Scopus)

Genomic makeup of the marine flavobacterium Nonlabens (Donghaeana) dokdonensis and identification of a novel class of rhodopsins

Kwon, S. K., Kim, B. K., Song, J. Y., Kwak, M. J., Lee, C. H., Yoon, J. H., Oh, T. K. & Kim, J. F., 2013, In : Genome Biology and Evolution. 5, 1, p. 187-199 13 p.

Research output: Contribution to journalArticle

59 Citations (Scopus)

Isolation and characterization of a novel agar-degrading marine bacterium, Gayadomonas joobiniege gen, nov, sp. nov., from the Southern Sea, Korea

Chi, W. J., Park, J. S., Kwak, M. J., Kim, J. F., Chang, Y. K. & Hong, S. K., 2013 Nov 28, In : Journal of microbiology and biotechnology. 23, 11, p. 1509-1518 10 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)
2012

Algorithm for predicting functionally equivalent proteins from BLAST and HMMER searches

Yu, D. S., Lee, D. H., Kim, S. K., Lee, C. H., Song, J. Y., Kong, E. B. & Kim, J. F., 2012 Aug 1, In : Journal of microbiology and biotechnology. 22, 8, p. 1054-1058 5 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Comparative multi-omics systems analysis of Escherichia coli strains B and K-12

Yoon, S. H., Han, M. J., Jeong, H., Lee, C. H., Xia, X. X., Lee, D. H., Shim, J. H., Lee, S. Y., Oh, T. K. & Kim, J. F., 2012 May 25, In : Genome biology. 13, 5, R37.

Research output: Contribution to journalArticle

84 Citations (Scopus)

Complete genome sequence of the endophytic Bacterium burkholderia sp. strain KJ006

Kwak, M. J., Song, J. Y., Kim, S. Y., Jeong, H., Kang, S. G., Kim, B. K., Kwon, S. K., Lee, C. H., Yu, D. S., Park, S. H. & Kima, J. F., 2012 Aug 1, In : Journal of Bacteriology. 194, 16, p. 4432-4433 2 p.

Research output: Contribution to journalComment/debate

20 Citations (Scopus)

Complete genome sequence of the probiotic bacterium Bifidobacterium bifidum strain BGN4

Yu, D. S., Jeong, H., Lee, D. H., Kwon, S. K., Song, J. Y., Kim, B. K., Park, M. S., Ji, G. E., Oh, T. K. & Kim, J. F., 2012 Sep 1, In : Journal of Bacteriology. 194, 17, p. 4757-4758 2 p.

Research output: Contribution to journalComment/debate

16 Citations (Scopus)

Construction and manipulation of a new Kaposi's sarcoma-associated herpesvirus bacterial artificial chromosome clone

Brulois, K. F., Chang, H., Lee, A. S. Y., Ensser, A., Wong, L. Y., Toth, Z., Lee, S. H., Lee, H. R., Myoung, J., Ganem, D., Oh, T. K., Kim, J. F., Gao, S. J. & Jung, J. U., 2012 Sep 1, In : Journal of Virology. 86, 18, p. 9708-9720 13 p.

Research output: Contribution to journalArticle

166 Citations (Scopus)

Draft genome sequence of the antifungal-producing plant-benefiting bacterium Burkholderia pyrrocinia CH-67

Song, J. Y., Kwak, M. J., Lee, K. Y., Kong, H. G., Kim, B. K., Kwon, S. K., Lee, S. W. & Kim, J. F., 2012 Dec 1, In : Journal of Bacteriology. 194, 23, p. 6649-6650 2 p.

Research output: Contribution to journalComment/debate

8 Citations (Scopus)

Genome sequence of an oligohaline hyperthermophilic archaeon, Thermococcus zilligii AN1, isolated from a terrestrial geothermal freshwater spring

Kim, B. K., Lee, S. H., Kim, S. Y., Jeong, H., Kwon, S. K., Lee, C. H., Song, J. Y., Yu, D. S., Kang, S. G. & Kim, J. F., 2012 Jul, In : Journal of Bacteriology. 194, 14, p. 3765-3766 2 p.

Research output: Contribution to journalComment/debate

4 Citations (Scopus)

Genome sequence of enterohemorrhagic Escherichia coli NCCP15658

Song, J. Y., Yoo, R. H., Jang, S. Y., Seong, W. K., Kim, S. Y., Jeong, H., Kang, S. G., Kim, B. K., Kwon, S. K., Lee, C. H., Yu, D. S., Park, M. S., Cho, S. H. & Kim, J. F., 2012 Jul 1, In : Journal of Bacteriology. 194, 14, p. 3749-3750 2 p.

Research output: Contribution to journalComment/debate

7 Citations (Scopus)

Genome sequence of the agar-degrading marine bacterium alteromonadaceae sp. Strain G7

Kwak, M. J., Song, J. Y., Kim, B. K., Chi, W. J., Kwon, S. K., Choi, S., Chang, Y. K., Hong, S. K. & Kim, J. F., 2012 Oct, In : Journal of Bacteriology. 194, 24, p. 6961-6962 2 p.

Research output: Contribution to journalArticle

8 Citations (Scopus)

Genome sequence of the hemolytic-uremic syndrome-causing strain Escherichia coli NCCP15647

Jeong, H., Zhao, F., Igori, D., Oh, K. H., Kim, S. Y., Kang, S. G., Kim, B. K., Kwon, S. K., Lee, C. H., Song, J. Y., Yu, D. S., Park, M. S., Cho, S. H. & Kim, J. F., 2012 Jul, In : Journal of Bacteriology. 194, 14, p. 3747-3748 2 p.

Research output: Contribution to journalComment/debate

9 Citations (Scopus)

Genome sequence of the leaf-colonizing bacterium Bacillus sp. Strain 5B6, isolated from a cherry tree

Kim, B. K., Chung, J. H., Kim, S. Y., Jeong, H., Kang, S. G., Kwon, S. K., Lee, C. H., Song, J. Y., Yu, D. S., Ryu, C. M. & Kim, J. F., 2012 Jul, In : Journal of Bacteriology. 194, 14, p. 3758-3759 2 p.

Research output: Contribution to journalComment/debate

12 Citations (Scopus)

Genome sequence of the plant growth-promoting rhizobacterium Bacillus sp. Strain JS

Song, J. Y., Kim, H. A., Kim, J. S., Kim, S. Y., Jeong, H., Kang, S. G., Kim, B. K., Kwon, S. K., Lee, C. H., Yu, D. S., Kim, B. S., Kim, S. H., Kwon, S. Y. & Kim, J. F., 2012 Jul 1, In : Journal of Bacteriology. 194, 14, p. 3760-3761 2 p.

Research output: Contribution to journalComment/debate

20 Citations (Scopus)

Genome sequence of the shiga toxin-producing Escherichia coli strain NCCP15657

Kim, B. K., Song, G. C., Hong, G. H., Seong, W. K., Kim, S. Y., Jeong, H., Kang, S. G., Kwon, S. K., Lee, C. H., Song, J. Y., Yu, D. S., Park, M. S., Cho, S. H. & Kim, J. F., 2012 Jul 1, In : Journal of Bacteriology. 194, 14, p. 3751-3752 2 p.

Research output: Contribution to journalComment/debate

5 Citations (Scopus)

Genome sequence of the thermotolerant yeast Kluyveromyces marxianus var. marxianus KCTC 17555

Jeong, H., Lee, D. H., Kim, S. H., Kim, H. J., Lee, K., Song, J. Y., Kim, B. K., Sung, B. H., Park, J. C., Sohn, J. H., Koo, H. M. & Kim, J. F., 2012 Dec, In : Eukaryotic Cell. 11, 12, p. 1584-1585 2 p.

Research output: Contribution to journalArticle

36 Citations (Scopus)
2011

Batch cultivation of bacterial cells in nanoliter reactor array

Dai, J., Yoon, S. H., Sim, H. Y., Oh, T. K., Kim, J. F. & Hong, J. W., 2011 Dec 1, 15th International Conference on Miniaturized Systems for Chemistry and Life Sciences 2011, MicroTAS 2011. p. 1710-1712 3 p. (15th International Conference on Miniaturized Systems for Chemistry and Life Sciences 2011, MicroTAS 2011; vol. 3).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Complete genome sequence of the polycyclic aromatic hydrocarbon-degrading bacterium Alteromonas sp. strain SN2

Jin, H. M., Jeong, H., Moon, E. J., Math, R. K., Lee, K., Kim, H. J., Jeon, C. O., Oh, T. K. & Kim, J. F., 2011 Aug 1, In : Journal of Bacteriology. 193, 16, p. 4292-4293 2 p.

Research output: Contribution to journalComment/debate

26 Citations (Scopus)

Draft genome sequence of the Paenibacillus polymyxa type strain (ATCC 842 T), a plant growth-promoting bacterium

Jeong, H., Park, S. Y., Chung, W. H., Kim, S. H., Kim, N., Park, S. H. & Kim, J. F., 2011 Sep 1, In : Journal of Bacteriology. 193, 18, p. 5026-5027 2 p.

Research output: Contribution to journalComment/debate

20 Citations (Scopus)