• 1346 Citations
  • 19 h-Index
19982020

Research output per year

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Research Output

1998

Bibliomapper: a cluster-based information visualization technique

Song, M., 1998, p. 130-136. 7 p.

Research output: Contribution to conferencePaper

9 Citations (Scopus)
2000

Visualization in information retrieval: A three-level analysis

Song, M., 2000, In : Journal of Information Science. 26, 1, p. 3-19 17 p.

Research output: Contribution to journalArticle

14 Citations (Scopus)
2001

Semantic relationships between highly cited articles and citing articles in information retrieval

Song, M. & Galardi, P., 2001, In : Proceedings of the ASIST Annual Meeting. 38, p. 171-181 11 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)
2002

Interactive Visualization System with Multidimensional Scaling

Song, M. & Lin, X., 2002, In : Proceedings of the ASIST Annual Meeting. 39, p. 562-563 2 p.

Research output: Contribution to journalArticle

2003

KPSpotter: A flexible information gain-based keyphrase extraction system

Song, M., Song, I. Y. & Hu, X., 2003, p. 50-53. 4 p.

Research output: Contribution to conferencePaper

39 Citations (Scopus)
2004

Design and development of a cross search engine for multiple heterogeneous databases using UML and design patterns

Song, M., Song, I. Y. & Chen, P. P., 2004 Mar, In : Information Systems Frontiers. 6, 1, p. 77-90 14 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Designing and developing an automatic interactive keyphrase extraction system with Unified Modeling Language (UML)

Song, M., Song, I. Y. & Hu, X., 2004 Nov, In : Proceedings of the ASIST Annual Meeting. 41, p. 367-372 6 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Extracting and mining protein-protein interaction network from biomedical literature

Hu, X., Yoo, I., Song, I. Y., Song, M., Han, J. & Lechner, M., 2004, Proceedings of the 2004 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB'04. p. 244-251 8 p. (Proceedings of the 2004 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB'04).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

13 Citations (Scopus)

Ontology-based scalable and portable information extraction system to extract biological knowledge from huge collection of biomedical Web documents

Hu, X., Lin, T. Y., Song, I. Y., Lin, X., Yoo, I., Lechner, M. & Song, M., 2004, Proceedings - IEEE/WIC/ACM International Conference on Web Intelligence, WI 2004. Zhong, N., Tirri, H., Yao, Y. & Zhou, L. (eds.). p. 77-83 7 p. (Proceedings - IEEE/WIC/ACM International Conference on Web Intelligence, WI 2004).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

14 Citations (Scopus)
2005

An automatic unsupervised querying algorithm for efficient information extraction in biomedical domain

Song, M., Song, I. Y., Hu, X. & Allen, R. B., 2005, Advances in Knowledge Discovery and Data Mining - 9th Pacific-Asia Conference, PAKDD 2005, Proceedings. Springer Verlag, p. 173-179 7 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 3518 LNAI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Integrating text chunking with mixture Hidden Markov Models for effective biomedical information extraction

Song, M., Song, I. Y., Hu, X. & Allen, R. B., 2005, In : Lecture Notes in Computer Science. 3515, II, p. 976-984 9 p.

Research output: Contribution to journalConference article

Open Access
5 Citations (Scopus)

KXtractor: An effective biomedical information extraction technique based on mixture hidden markov models

Song, M., Song, I. Y., Hu, X. & Allen, R. B., 2005, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). p. 68-81 14 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 3680 LNBI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Citation (Scopus)

Mining undiscovered public knowledge from complementary and non-interactive biomedical literature through semantic pruning

Hu, X., Yoo, I., Song, M., Zhang, Y. & Song, I. Y., 2005, CIKM'05 - Proceedings of the 14th ACM International Conference on Information and Knowledge Management. Association for Computing Machinery, p. 249-250 2 p. (International Conference on Information and Knowledge Management, Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Citations (Scopus)

Semantic query expansion combining association rules with ontologies and information retrieval techniques

Song, M., Song, I. Y., Hu, X. & Allen, R., 2005, In : Lecture Notes in Computer Science. 3589, p. 326-335 10 p.

Research output: Contribution to journalConference article

11 Citations (Scopus)
2006

A semi-supervised efficient learning approach to extract biological relationships from web-based biomedical digital library

Hu, X., Lin, T. Y., Song, I. Y., Lin, X., Yoo, I. & Song, M., 2006, In : Web Intelligence and Agent Systems. 4, 3, p. 327-339 13 p.

Research output: Contribution to journalArticle

5 Citations (Scopus)

Automatic extraction for creating a lexical repository of abbreviations in the biomedical literature

Song, M., Song, I. Y. & Lee, K. J., 2006, Data Warehousing and Knowledge Discovery - 8th International Conference, DaWaK 2006, Proceedings. Springer Verlag, p. 384-393 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4081 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Citations (Scopus)

Keyphrase extraction-based query expansion in digital libraries

Song, M., Song, I. Y., Allen, R. B. & Obradovic, Z., 2006, 6th ACM/IEEE-CS Joint Conference on Digital Libraries 2006: Opening Information Horizons, JCDL '06. p. 202-209 8 p. (Proceedings of the ACM/IEEE Joint Conference on Digital Libraries; vol. 2006).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

14 Citations (Scopus)
2007

A comparison study on algorithms of detecting long forms for short forms in biomedical text

Torii, M., Hu, Z. Z., Song, M., Wu, C. H. & Liu, H., 2007 Nov 27, In : BMC bioinformatics. 8, SUPPL. 9, S5.

Research output: Contribution to journalArticle

22 Citations (Scopus)

A hybrid abbreviation extraction technique for biomedical literature

Song, M. & Yoo, I., 2007, Proceedings - 2007 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2007. p. 42-47 6 p. 4413035. (Proceedings - 2007 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2007).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Automatic Query Expansion with Keyphrases and POS Phrase Categorization for Effective Biomedical Text Mining

Song, M. & Song, I. Y., 2007 May 23, Knowledge Discovery in Bioinformatics: Techniques, Methods, and Applications. John Wiley & Sons, Inc., p. 197-207 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Integration of association rules and ontologies for semantic query expansion

Song, M., Song, I. Y., Hu, X. & Allen, R. B., 2007 Oct, In : Data and Knowledge Engineering. 63, 1, p. 63-75 13 p.

Research output: Contribution to journalArticle

66 Citations (Scopus)
2008

Automatic extraction of abbreviation for emergency management websites

Song, M. & Chang, P., 2008 Jan 1, Proceedings of ISCRAM 2008 - 5th International Conference on Information Systems for Crisis Response and Management. Information Systems for Crisis Response and Management, ISCRAM, p. 93-100 8 p. (Proceedings of ISCRAM 2008 - 5th International Conference on Information Systems for Crisis Response and Management).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Citations (Scopus)

Detecting duplicate biological entities using markov random field-based edit distance

Song, M. & Rudniy, A., 2008 Dec 1, Proceedings - IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2008. p. 457-460 4 p. 4684939. (Proceedings - IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2008).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

7 Citations (Scopus)

Document clustering by semantic smoothing and Dynamic Growing Cell Structure (DynGCS) for biomedical literature

Song, M., Hu, X., Yoo, I. & Koppel, E., 2008, Data Warehousing and Knowledge Discovery - 10th International Conference, DaWaK 2008, Proceedings. p. 217-226 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5182 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Information extraction in biomedical literature

Song, M., Song, I. Y., Hu, X. & Han, H., 2008 Sep 30, Medical Informatics: Concepts, Methodologies, Tools, and Applications. IGI Global, Vol. 1-4. p. 314-321 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

IntegraL: Lightweight link-based integration of heterogeneous digital library collections and services in the deep web

Song, M. & Bieber, M., 2008, Proceedings - 10th IEEE Joint Conference on E-Commerce Technology and the 5th Enterprise Computing, E-Commerce and E-Services, CEC 2008 and EEE 2008. p. 369-375 7 p. 4785092. (Proceedings - 10th IEEE Joint Conference on E-Commerce Technology and the 5th Enterprise Computing, E-Commerce and E-Services, CEC 2008 and EEE 2008).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2009

A dynamic and semantically-aware technique for document clustering in biomedical literature

Min, S., Xiaohua, H., Illhoi, Y. & Koppel, E., 2009 Oct, In : International Journal of Data Warehousing and Mining. 5, 4, p. 44-57 14 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)

An outcome discovery system to determine mortality factors in primary care facilities

Murillo, J. & Song, M., 2009, 3rd ACM International Workshop on Data and Text Mining in Bioinformatics, DTMBIO'09, Co-located with the 18th ACM International Conference on Information and Knowledge Management, CIKM 2009. p. 95-96 2 p. (International Conference on Information and Knowledge Management, Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Citation (Scopus)

CGM: A biomedical text categorization approach using concept graph mining

Bleik, S., Song, M., Smalter, A., Huan, J. & Lushington, G., 2009, Proceedings - 2009 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2009. p. 38-43 6 p. 5332134. (Proceedings - 2009 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2009).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

6 Citations (Scopus)

Extraction of key-phrases from biomedical full-text with supervised learning techniques

Qi, Y., Yagci, A. I. & Song, M., 2009, 15th Americas Conference on Information Systems 2009, AMCIS 2009. p. 2992-3000 9 p. (15th Americas Conference on Information Systems 2009, AMCIS 2009; vol. 5).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Citation (Scopus)

Fast max-margin clustering for unsupervised word sense disambiguation in biomedical texts

Duan, W., Song, M. & Yates, A., 2009 Mar 19, In : BMC bioinformatics. 10, SUPPL. 3, S4.

Research output: Contribution to journalArticle

14 Citations (Scopus)

MKEM: A multi-level knowledge emergence model for mining undiscovered public knowledge

Ijaz, A. Z., Song, M. & Lee, D., 2009, 3rd ACM International Workshop on Data and Text Mining in Bioinformatics, DTMBIO'09, Co-located with the 18th ACM International Conference on Information and Knowledge Management, CIKM 2009. p. 51-58 8 p. (International Conference on Information and Knowledge Management, Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Text mining for bioinformatics: State of the art review

Qi, Y., Zhang, Y. & Song, M., 2009, Proceedings - 2009 2nd IEEE International Conference on Computer Science and Information Technology, ICCSIT 2009. p. 398-401 4 p. 5234922. (Proceedings - 2009 2nd IEEE International Conference on Computer Science and Information Technology, ICCSIT 2009).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Citations (Scopus)
2010

A quantitative assessment of SENSATIONAL with an exploration of its applications

Xiong, W., Song, M. & Watrous-deVersterre, L., 2010, Proceedings of the 23rd International Florida Artificial Intelligence Research Society Conference, FLAIRS-23. p. 289-294 6 p. (Proceedings of the 23rd International Florida Artificial Intelligence Research Society Conference, FLAIRS-23).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Biomedical concept extraction using concept graphs and ontology-based mapping

Bleik, S., Xiong, W., Wang, Y. & Song, M., 2010, Proceedings - 2010 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2010. p. 553-556 4 p. 5706627. (Proceedings - 2010 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2010).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Citations (Scopus)

Combining active learning and semi-supervised learning techniques to extract protein interaction sentences

Song, M., Yu, H. & Han, W. S., 2010, Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining. Association for Computing Machinery, p. 35-44 10 p. (Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Detecting duplicate biological entities using Markov random field-based edit distance

Song, M. & Rudniy, A., 2010 Nov, In : Knowledge and Information Systems. 25, 2, p. 371-387 17 p.

Research output: Contribution to journalArticle

8 Citations (Scopus)

Detecting duplicate biological entities using shortest path edit distance

Rudniy, A., Song, M. & Geller, J., 2010 Jul, In : International Journal of Data Mining and Bioinformatics. 4, 4, p. 395-410 16 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)

Discovering biological processes and side effects relationship using the process-drug-side effect network

Lee, S., Song, M. & Lee, D., 2010, Proc. of the ACM 4th International Workshop on Data and Text Mining in Biomedical Informatics, DTMBIO'10, Co-located with 19th International Conference on Information and Knowledge Management, CIKM'10. p. 31-39 9 p. (International Conference on Information and Knowledge Management, Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

MKEM: A Multi-level Knowledge Emergence Model for mining undiscovered public knowledge

Ijaz, A. Z., Song, M. & Lee, D., 2010 Apr 16, In : BMC bioinformatics. 11, SUPPL. 2, S3.

Research output: Contribution to journalArticle

9 Citations (Scopus)

Shortest Path Edit Distance for detecting duplicate biological entities

Rudniy, A., Song, M. & Geller, J., 2010, 2010 ACM International Conference on Bioinformatics and Computational Biology, ACM-BCB 2010. p. 442-444 3 p. (2010 ACM International Conference on Bioinformatics and Computational Biology, ACM-BCB 2010).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Citation (Scopus)

Shortest Path Edit Distance for Enhancing UMLS Integration and Audit

Rudniy, A., Geller, J. & Song, M., 2010, In : AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. 2010, p. 697-701 5 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Supplementing virtual documents with just-in-time hypermedia functionality

Zhang, L., Bieber, M., Song, M., Oria, V. & Millard, D. E., 2010 Sep, In : International Journal on Digital Libraries. 11, 3, p. 155-168 14 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)
2011

A comparative study of an unsupervised word sense disambiguation approach

Xiong, W., Song, M. & deDeversterre, L. W., 2011, Applied Natural Language Processing: Identification, Investigation and Resolution. IGI Global, p. 412-422 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Building the process-drug-side effect network to discover the relationship between biological Processes and side effects

Lee, S., Lee, K. H., Song, M. & Lee, D., 2011 Mar 29, In : BMC bioinformatics. 12, SUPPL. 2, S2.

Research output: Contribution to journalArticle

53 Citations (Scopus)

Combining active learning and semi-supervised learning techniques to extract protein interaction sentences.

Song, M., Yu, H. & Han, W. S., 2011, In : BMC bioinformatics. 12 Suppl 12, p. S4 S4.

Research output: Contribution to journalArticle

18 Citations (Scopus)

Combining supervised learning techniques to key-phrase extraction for biomedical full-text

Qi, Y., Song, M., Yoon, S. C. & Watrous-De Versterre, L., 2011 Jan, In : International Journal of Intelligent Information Technologies. 7, 1, p. 33-44 12 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)