• 1346 Citations
  • 19 h-Index
19982020

Research output per year

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Research Output

2013

Entitymetrics: Measuring the Impact of Entities

Ding, Y., Song, M., Han, J., Yu, Q., Yan, E., Lin, L. & Chambers, T., 2013 Aug 29, In : PloS one. 8, 8, e71416.

Research output: Contribution to journalArticle

32 Citations (Scopus)

Generation and application of drug indication inference models using typed network motif comparison analysis

Choi, J., Kim, K., Song, M. & Lee, D., 2013, In : BMC Medical Informatics and Decision Making. 13, SUPPL1, S2.

Research output: Contribution to journalArticle

6 Citations (Scopus)

Investigation into the existence of the indexer effect in key phrase extraction

Hahm, J. E., Kim, S. Y., Kim, M. C. & Song, M., 2013, In : Information Research. 18, 4

Research output: Contribution to journalArticle

1 Citation (Scopus)

RT2M: Real-time twitter trend mining system

Song, M. & Kim, M. C., 2013 Aug 12, p. 64-71. 8 p.

Research output: Contribution to conferencePaper

12 Citations (Scopus)
1 Citation (Scopus)

Text categorization of biomedical data sets using graph kernels and a controlled Vocabulary

Bleik, S., Mishra, M., Huan, J. & Song, M., 2013 Sep, In : IEEE/ACM Transactions on Computational Biology and Bioinformatics. 10, 5, p. 1211-1217 7 p., 6475935.

Research output: Contribution to journalArticle

22 Citations (Scopus)
3 Citations (Scopus)

Workshop summary for the 2013 international workshop on mining unstructured big data using natural language processing

Liu, X., Chen, M., Ding, Y. & Song, M., 2013, CIKM 2013 - Proceedings of the 22nd ACM International Conference on Information and Knowledge Management. p. 2547-2548 2 p. (International Conference on Information and Knowledge Management, Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2012

A technique for suggesting related Wikipedia articles using link analysis

Markson, C. & Song, M., 2012, JCDL '12 - Proceedings of the 12th ACM/IEEE-CS Joint Conference on Digital Libraries. p. 345-346 2 p. (Proceedings of the ACM/IEEE Joint Conference on Digital Libraries).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A trend analysis of domain-specific literatures with content and co-author network similarity

Yang, C. C., Tang, X., Song, M. & Kim, S., 2012, The Outreach of Digital Libraries: A Globalized Resource Network - 14th International Conference on Asia-Pacific Digital Libraries, ICADL 2012, Proceedings. p. 73-76 4 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7634 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

BioKeySpotter: An Unsupervised Keyphrase Extraction Technique in the Biomedical Full-Text Collection

Song, M. & Tanapaisankit, P., 2012, Data Mining: Foundations and Intelligent Paradigms: Volume 3:Medical,Health, Social, Biological and other Applications. Holmes, D. & Jain, L. (eds.). p. 19-27 9 p. (Intelligent Systems Reference Library; vol. 25).

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Citations (Scopus)

Biomedical text categorization with concept graph representations using a controlled vocabulary

Mishra, M., Huan, J., Bleik, S. & Song, M., 2012, Proc. of the 11th Int. Workshop on Data Mining in Bioinformatics, BIOKDD 2012 - Held in Conjunction with the 18th ACM SIGKDD Int. Conference on Knowledge Discovery and Data Mining, SIGKDD'12. p. 26-32 7 p. (Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

10 Citations (Scopus)

Concept chaining utilizing meronyms in text characterization

Watrous-DeVersterre, L., Wang, C. & Song, M., 2012, JCDL '12 - Proceedings of the 12th ACM/IEEE-CS Joint Conference on Digital Libraries. p. 241-248 8 p. (Proceedings of the ACM/IEEE Joint Conference on Digital Libraries).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Citation (Scopus)

Discovering context-specific relationships from biological literature by using multi-level context terms

Lee, S., Choi, J., Park, K., Song, M. & Lee, D., 2012, In : BMC Medical Informatics and Decision Making. 12, SUPPL. 1, S1.

Research output: Contribution to journalArticle

15 Citations (Scopus)

DTMBIO'12 welcome by chairs

Ananiadou, S., Lee, D., Xu, H. & Song, M., 2012, In : International Conference on Information and Knowledge Management, Proceedings. p. iii

Research output: Contribution to journalEditorial

DTMBIO 2012: International workshop on data and text mining in biomedical informatics

Ananiadou, S., Lee, D., Xu, H. & Song, M., 2012, CIKM 2012 - Proceedings of the 21st ACM International Conference on Information and Knowledge Management. p. 2766-2767 2 p. (ACM International Conference Proceeding Series).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Histogram difference string distance for enhancing ontology integration in bioinformatics

Rudniy, A., Geller, J. & Song, M., 2012, 4th International Conference on Bioinformatics and Computational Biology 2012, BICoB 2012. p. 108-113 6 p. (4th International Conference on Bioinformatics and Computational Biology 2012, BICoB 2012).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Citation (Scopus)

Mapping the field of Bioinformatics with a content and co-Authorship analysis

Song, M., Yang, C. C., Tang, X. & Han, W. S., 2012, Proceedings - 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2012. p. 774-781 8 p. 6470238. (Proceedings - 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2012).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Personalized query expansion in the QIC system

Tanapaisankit, P., Watrous-DeVersterre, L. & Song, M., 2012, JCDL '12 - Proceedings of the 12th ACM/IEEE-CS Joint Conference on Digital Libraries. p. 259-262 4 p. (Proceedings of the ACM/IEEE Joint Conference on Digital Libraries).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Citations (Scopus)

Research on multi-agent comprehensive evaluation model based on attribute coordinate

Xu, G., Min, S. & Feng, J., 2012, Proceedings - 2012 IEEE International Conference on Granular Computing, GrC 2012. p. 556-562 7 p. 6468702. (Proceedings - 2012 IEEE International Conference on Granular Computing, GrC 2012).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

8 Citations (Scopus)

TNMCA: Generation and application of network motif based inference models for drug repositioning

Choi, J., Kim, K., Song, M. & Lee, D., 2012, DTMBIO'12 - Proceedings of the 6th ACM International Workshop on Data and Text Mining in Biomedical Informatics, Co-located with CIKM 2012. p. 61-68 8 p. (International Conference on Information and Knowledge Management, Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Citation (Scopus)
2011

A comparative study of an unsupervised word sense disambiguation approach

Xiong, W., Song, M. & deDeversterre, L. W., 2011, Applied Natural Language Processing: Identification, Investigation and Resolution. IGI Global, p. 412-422 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Building the process-drug-side effect network to discover the relationship between biological Processes and side effects

Lee, S., Lee, K. H., Song, M. & Lee, D., 2011 Mar 29, In : BMC bioinformatics. 12, SUPPL. 2, S2.

Research output: Contribution to journalArticle

53 Citations (Scopus)

Combining active learning and semi-supervised learning techniques to extract protein interaction sentences.

Song, M., Yu, H. & Han, W. S., 2011, In : BMC bioinformatics. 12 Suppl 12, p. S4 S4.

Research output: Contribution to journalArticle

18 Citations (Scopus)

Combining supervised learning techniques to key-phrase extraction for biomedical full-text

Qi, Y., Song, M., Yoon, S. C. & Watrous-De Versterre, L., 2011 Jan, In : International Journal of Intelligent Information Technologies. 7, 1, p. 33-44 12 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)

Developing a concept extraction technique with ensemble pathway

Tanapaisankit, P., Song, M. & Fox, E. A., 2011, JCDL'11 - Proceedings of the 2011 ACM/IEEE Joint Conference on Digital Libraries. p. 405-406 2 p. (Proceedings of the ACM/IEEE Joint Conference on Digital Libraries).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

DTMBIO'11 welcome by chairs

Ananiadou, S., Lee, D., Navathe, S. & Song, M., 2011, In : International Conference on Information and Knowledge Management, Proceedings. p. iii-iv

Research output: Contribution to journalEditorial

DTMBIO 2011: International Workshop on Data and Textmining in Biomedical Informatics

Ananiadou, S., Lee, D., Navathe, S. & Song, M., 2011, CIKM'11 - Proceedings of the 2011 ACM International Conference on Information and Knowledge Management. p. 2617-2618 2 p. (International Conference on Information and Knowledge Management, Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Extracting biomedical concepts from fulltext by relative importance in a graph model

Song, M., Bleik, S., Yu, H. & Han, W. S., 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011. p. 586-593 8 p. 6112433. (2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Citation (Scopus)

Inferring hidden relationships from biological literature with multi-level context terms

Lee, S., Choi, J., Park, K., Song, M. & Lee, D., 2011, CIKM 2011 Glasgow: DTMBIO'11 - Proceedings of the ACM 5th International Workshop on Data and Text Mining in Biomedical Informatics. p. 27-34 8 p. (International Conference on Information and Knowledge Management, Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Novel recommendation based on Personal Popularity Tendency

Oh, J., Park, S., Yu, H., Song, M. & Park, S. T., 2011, Proceedings - 11th IEEE International Conference on Data Mining, ICDM 2011. p. 507-516 10 p. 6137255. (Proceedings - IEEE International Conference on Data Mining, ICDM).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

49 Citations (Scopus)
2010

A quantitative assessment of SENSATIONAL with an exploration of its applications

Xiong, W., Song, M. & Watrous-deVersterre, L., 2010, Proceedings of the 23rd International Florida Artificial Intelligence Research Society Conference, FLAIRS-23. p. 289-294 6 p. (Proceedings of the 23rd International Florida Artificial Intelligence Research Society Conference, FLAIRS-23).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Biomedical concept extraction using concept graphs and ontology-based mapping

Bleik, S., Xiong, W., Wang, Y. & Song, M., 2010, Proceedings - 2010 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2010. p. 553-556 4 p. 5706627. (Proceedings - 2010 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2010).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Citations (Scopus)

Combining active learning and semi-supervised learning techniques to extract protein interaction sentences

Song, M., Yu, H. & Han, W. S., 2010, Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining. Association for Computing Machinery, p. 35-44 10 p. (Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Detecting duplicate biological entities using Markov random field-based edit distance

Song, M. & Rudniy, A., 2010 Nov, In : Knowledge and Information Systems. 25, 2, p. 371-387 17 p.

Research output: Contribution to journalArticle

8 Citations (Scopus)

Detecting duplicate biological entities using shortest path edit distance

Rudniy, A., Song, M. & Geller, J., 2010 Jul, In : International Journal of Data Mining and Bioinformatics. 4, 4, p. 395-410 16 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)

Discovering biological processes and side effects relationship using the process-drug-side effect network

Lee, S., Song, M. & Lee, D., 2010, Proc. of the ACM 4th International Workshop on Data and Text Mining in Biomedical Informatics, DTMBIO'10, Co-located with 19th International Conference on Information and Knowledge Management, CIKM'10. p. 31-39 9 p. (International Conference on Information and Knowledge Management, Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

MKEM: A Multi-level Knowledge Emergence Model for mining undiscovered public knowledge

Ijaz, A. Z., Song, M. & Lee, D., 2010 Apr 16, In : BMC bioinformatics. 11, SUPPL. 2, S3.

Research output: Contribution to journalArticle

9 Citations (Scopus)

Shortest Path Edit Distance for detecting duplicate biological entities

Rudniy, A., Song, M. & Geller, J., 2010, 2010 ACM International Conference on Bioinformatics and Computational Biology, ACM-BCB 2010. p. 442-444 3 p. (2010 ACM International Conference on Bioinformatics and Computational Biology, ACM-BCB 2010).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Citation (Scopus)

Shortest Path Edit Distance for Enhancing UMLS Integration and Audit

Rudniy, A., Geller, J. & Song, M., 2010, In : AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. 2010, p. 697-701 5 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Supplementing virtual documents with just-in-time hypermedia functionality

Zhang, L., Bieber, M., Song, M., Oria, V. & Millard, D. E., 2010 Sep, In : International Journal on Digital Libraries. 11, 3, p. 155-168 14 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)
2009

A dynamic and semantically-aware technique for document clustering in biomedical literature

Min, S., Xiaohua, H., Illhoi, Y. & Koppel, E., 2009 Oct, In : International Journal of Data Warehousing and Mining. 5, 4, p. 44-57 14 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)

An outcome discovery system to determine mortality factors in primary care facilities

Murillo, J. & Song, M., 2009, 3rd ACM International Workshop on Data and Text Mining in Bioinformatics, DTMBIO'09, Co-located with the 18th ACM International Conference on Information and Knowledge Management, CIKM 2009. p. 95-96 2 p. (International Conference on Information and Knowledge Management, Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Citation (Scopus)

CGM: A biomedical text categorization approach using concept graph mining

Bleik, S., Song, M., Smalter, A., Huan, J. & Lushington, G., 2009, Proceedings - 2009 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2009. p. 38-43 6 p. 5332134. (Proceedings - 2009 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2009).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

6 Citations (Scopus)

Extraction of key-phrases from biomedical full-text with supervised learning techniques

Qi, Y., Yagci, A. I. & Song, M., 2009, 15th Americas Conference on Information Systems 2009, AMCIS 2009. p. 2992-3000 9 p. (15th Americas Conference on Information Systems 2009, AMCIS 2009; vol. 5).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Citation (Scopus)

Fast max-margin clustering for unsupervised word sense disambiguation in biomedical texts

Duan, W., Song, M. & Yates, A., 2009 Mar 19, In : BMC bioinformatics. 10, SUPPL. 3, S4.

Research output: Contribution to journalArticle

14 Citations (Scopus)

MKEM: A multi-level knowledge emergence model for mining undiscovered public knowledge

Ijaz, A. Z., Song, M. & Lee, D., 2009, 3rd ACM International Workshop on Data and Text Mining in Bioinformatics, DTMBIO'09, Co-located with the 18th ACM International Conference on Information and Knowledge Management, CIKM 2009. p. 51-58 8 p. (International Conference on Information and Knowledge Management, Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution