• 1379 Citations
  • 17 h-Index
19992020
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Research Output 1999 2020

2020
Gene expression
Brain
Learning algorithms
Learning systems
Magnetic resonance
2019
2 Citations (Scopus)

ADC: Advanced document clustering using contextualized representations

Park, J., Park, C., Kim, J., Cho, M. & Park, S., 2019 Dec 15, In : Expert Systems with Applications. 137, p. 157-166 10 p.

Research output: Contribution to journalArticle

Natural language processing systems
Experiments
Feature extraction
Entropy
Semantics

A scalable and persistent key-value store using non-volatile memory

Kim, D., Choi, W. G., Sung, H. & Park, S., 2019 Jan 1, Proceedings of the ACM Symposium on Applied Computing. Association for Computing Machinery, p. 464-467 4 p. (Proceedings of the ACM Symposium on Applied Computing; vol. Part F147772).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Data storage equipment
Dynamic random access storage
Scalability
Degradation
Costs

A write-friendly approach to manage namespace of Hadoop distributed file system by utilizing nonvolatile memory

Choi, W. G. & Park, S., 2019 Oct 1, In : Journal of Supercomputing. 75, 10, p. 6632-6662 31 p.

Research output: Contribution to journalArticle

Distributed File System
Metadata
Data storage equipment
Flash memory
Hard disk storage

LESS: Logging Exploiting SnapShot

Sung, H., Jin, M., Shin, M., Roh, H., Choi, W. & Park, S. H., 2019 Apr 1, 2019 IEEE International Conference on Big Data and Smart Computing, BigComp 2019 - Proceedings. Institute of Electrical and Electronics Engineers Inc., 8679377. (2019 IEEE International Conference on Big Data and Smart Computing, BigComp 2019 - Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Data storage equipment
Logging
Durability
Throughput
Degradation
2 Citations (Scopus)

PMAMCA: Prediction of microRNA-disease association utilizing a matrix completion approach

Ha, J., Park, C. & Park, S., 2019 Mar 20, In : BMC Systems Biology. 13, 1, 33.

Research output: Contribution to journalArticle

Open Access
Matrix Completion
MicroRNA
MicroRNAs
Prediction
Biological Phenomena
2018

CASS: A distributed network clustering algorithm based on structure similarity for large-scale network

Kim, J., Shin, M., Kim, J., Park, C., Lee, S., Woo, J., Kim, H., Seo, D., Yu, S. & Park, S., 2018 Oct, In : PloS one. 13, 10, e0203670.

Research output: Contribution to journalArticle

Clustering algorithms
Cluster Analysis
Electric sparks
Data storage equipment
6-chloropenicillanic acid S-sulfoxide

Machine learning-based identification of genetic interactions from heterogeneous gene expression profiles

Park, C., Kim, J. R., Kim, J. & Park, S., 2018 Jul, In : PloS one. 13, 7, e0201056.

Research output: Contribution to journalArticle

artificial intelligence
Transcriptome
Gene expression
Learning systems
Identification (control systems)

MultiPath MultiGet: An Optimized Multiget Method Leveraging SSD Internal Parallelism

Song, K., Kim, J., Lee, D. & Park, S. H., 2018 Jan 1, Proceedings of the 7th International Conference on Emerging Databases - Technologies, Applications, and Theory. Choi, W., Lee, W., Song, M. & Jung, S. (eds.). Springer Verlag, p. 138-150 13 p. (Lecture Notes in Electrical Engineering; vol. 461).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Servers
Throughput
Bandwidth
Processing
Experiments
3 Citations (Scopus)

MV-FTL: An FTL that provides page-level multi-version management

Lee, D., Shin, M., Choi, W., Roh, H. & Park, S., 2018 Jan, In : IEEE Transactions on Knowledge and Data Engineering. 30, 1, p. 87-100 14 p.

Research output: Contribution to journalArticle

Compaction
Industry
4 Citations (Scopus)

Selective I/O bypass and load balancing method for write-through SSD caching in big data analytics

Kim, J., Roh, H. & Park, S. H., 2018 Apr 1, In : IEEE Transactions on Computers. 67, 4, p. 589-595 7 p.

Research output: Contribution to journalArticle

Caching
Load Balancing
Resource allocation
Hard disk storage
Cache
2017
1 Citation (Scopus)

Advanced block nested loop join for extending SSD lifetime

Roh, H., Shin, M., Jung, W. & Park, S. H., 2017 Apr 1, In : IEEE Transactions on Knowledge and Data Engineering. 29, 4, p. 743-756 14 p., 7814205.

Research output: Contribution to journalArticle

Flash memory
Processing
Costs
Industry
1 Citation (Scopus)

CATS: A big network clustering algorithm based on triangle structures

Shin, M., Kim, J., Kim, J., Seo, D., Park, C., Yu, S. J. & Park, S. H., 2017 Apr 3, 32nd Annual ACM Symposium on Applied Computing, SAC 2017. Association for Computing Machinery, p. 1590-1592 3 p. (Proceedings of the ACM Symposium on Applied Computing; vol. Part F128005).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Clustering algorithms
Electric network analysis
Data structures
Big data
3 Citations (Scopus)

CSnet: Constructing symptom network based on disease-symptom relationships

Hwang, S., Kim, J., Kim, J. & Park, S. H., 2017 Nov 27, 2017 IEEE International Conference on Systems, Man, and Cybernetics, SMC 2017. Institute of Electrical and Electronics Engineers Inc., Vol. 2017-January. p. 960-965 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Term
Biotechnology
Pharmaceuticals
Search engines
Systems Analysis
1 Citation (Scopus)

DSS: A biclustering method to identify diverse and state specific gene modules in gene expression data

Kim, J., Yeu, Y., Kim, J., Yoon, Y. & Park, S. H., 2017 Feb 6, 2016 IEEE International Conference on Systems, Man, and Cybernetics, SMC 2016 - Conference Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 430-434 5 p. 7844279. (2016 IEEE International Conference on Systems, Man, and Cybernetics, SMC 2016 - Conference Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Biclustering
Gene Expression Data
Gene expression
Genes
Gene
3 Citations (Scopus)

GRiD: Gathering rich data from PubMed using one-class SVM

Cha, J., Kim, J. & Park, S., 2017 Feb 6, 2016 IEEE International Conference on Systems, Man, and Cybernetics, SMC 2016 - Conference Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 4325-4331 7 p. 7844911. (2016 IEEE International Conference on Systems, Man, and Cybernetics, SMC 2016 - Conference Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Support vector machines
Support Vector Machine
Term
Vectorization
Prostate Cancer
4 Citations (Scopus)

IMA: Identifying disease-related genes using MeSH terms and association rules

Kim, J., Bang, C., Hwang, H., Kim, D., Park, C. & Park, S. H., 2017 Dec 1, In : Journal of Biomedical Informatics. 76, p. 110-123 14 p.

Research output: Contribution to journalArticle

Association rules
Genes
Prostatic Neoplasms
Gene Regulatory Networks
Stomach Neoplasms
12 Citations (Scopus)

Improved prediction of breast cancer outcome by identifying heterogeneous biomarkers

Choi, J., Park, S. H., Yoon, Y. & Ahn, J., 2017 Nov 15, In : Bioinformatics. 33, 22, p. 3619-3626 8 p.

Research output: Contribution to journalArticle

Biomarkers
Breast Cancer
Genes
Breast Neoplasms
Gene

ISN: Inferring disease-related genes using seed gene and network analysis

Kim, J. & Park, S., 2017 Nov 27, 2017 IEEE International Conference on Systems, Man, and Cybernetics, SMC 2017. Institute of Electrical and Electronics Engineers Inc., p. 2012-2017 6 p. (2017 IEEE International Conference on Systems, Man, and Cybernetics, SMC 2017; vol. 2017-January).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Network Analysis
Electric network analysis
Seed
Genes
Gene

LIF: A method to infer disease-gene relationships using literature data and impact factor

Kim, J., Kim, C., Lee, J., Park, S. & Kang, H., 2017 Apr 3, 32nd Annual ACM Symposium on Applied Computing, SAC 2017. Association for Computing Machinery, Vol. Part F128005. p. 3-10 8 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Genes

Machine learning based performance modeling of flash SSDs

Kim, J., Park, J. & Park, S., 2017 Nov 6, CIKM 2017 - Proceedings of the 2017 ACM Conference on Information and Knowledge Management. Association for Computing Machinery, p. 2135-2138 4 p. (International Conference on Information and Knowledge Management, Proceedings; vol. Part F131841).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Modeling
Machine learning
Load balancing
Generalized linear model
Support vector machine

Neural network for saturation prediction of solid state drives

Kim, J., Park, J. & Park, S. H., 2017 Nov 27, 2017 IEEE International Conference on Systems, Man, and Cybernetics, SMC 2017. Institute of Electrical and Electronics Engineers Inc., p. 2069-2074 6 p. (2017 IEEE International Conference on Systems, Man, and Cybernetics, SMC 2017; vol. 2017-January).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Saturation
Neural Networks
Neural networks
Flash
Prediction

Optimization of a multiversion index on SSDs to improve system performance

Choi, W. G., Shin, M., Lee, D., Park, H. & Park, S. H., 2017 Feb 6, 2016 IEEE International Conference on Systems, Man, and Cybernetics, SMC 2016 - Conference Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 1620-1625 6 p. 7844471. (2016 IEEE International Conference on Systems, Man, and Cybernetics, SMC 2016 - Conference Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

System Performance
Optimization
Hard disk storage
Sequential Patterns
Query processing
1 Citation (Scopus)

Recommending alternative drugs by using generic drug names to minimise side effects

Hwang, S., Kim, J., Kim, J. & Park, S., 2017 Jan 1, In : International Journal of Data Mining and Bioinformatics. 18, 4, p. 301-314 14 p.

Research output: Contribution to journalArticle

Generic Drugs
Medicine
Names
drug
Processing
1 Citation (Scopus)

SSL: Inferring disease-related genes using sentence structure and literature data

Kim, J., Choi, W. G., Kim, J. & Park, S. H., 2017 Mar 17, 2017 IEEE International Conference on Big Data and Smart Computing, BigComp 2017. Institute of Electrical and Electronics Engineers Inc., p. 100-107 8 p. 7881723. (2017 IEEE International Conference on Big Data and Smart Computing, BigComp 2017).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Genes
2016

A method for obtaining rich data from PubMed using SVM

Cha, J., Kim, J., Yeu, Y. & Park, S., 2016 Apr 4, 2016 Symposium on Applied Computing, SAC 2016. Association for Computing Machinery, p. 37-39 3 p. (Proceedings of the ACM Symposium on Applied Computing; vol. 04-08-April-2016).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Support vector machines
Data mining
3 Citations (Scopus)

Discovering disease-associated drugs using web crawl data

Kim, H. & Park, S., 2016 Apr 4, 2016 Symposium on Applied Computing, SAC 2016. Association for Computing Machinery, p. 9-14 6 p. (Proceedings of the ACM Symposium on Applied Computing; vol. 04-08-April-2016).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Efficient processing of continuous queries utilizing F-relationship in stock databases

Park, S., Ha, Y. M., Park, C. & Kim, S. W., 2016 Jan, In : Computer Science and Information Systems. 13, 1, p. 131-149 19 p.

Research output: Contribution to journalArticle

Query processing
Processing
Experiments
Financial markets
4 Citations (Scopus)

External Mergesort for Flash-Based Solid State Drives

Lee, J., Roh, H. & Park, S., 2016 May 1, In : IEEE Transactions on Computers. 65, 5, p. 1518-1527 10 p., 7145402.

Research output: Contribution to journalArticle

Flash-based SSDs
Flash
Hard disk storage
Data storage equipment
Sorting
1 Citation (Scopus)

IDO: Inferring describable disease-gene relationships using opinion sentences

Kim, J., Yoon, Y. & Park, S., 2016 Apr 4, 2016 Symposium on Applied Computing, SAC 2016. Association for Computing Machinery, p. 15-22 8 p. (Proceedings of the ACM Symposium on Applied Computing; vol. 04-08-April-2016).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Genes
Electric network analysis

Optimizing hash partitioning for solid state drives

Shin, M., Roh, H., Jung, W. & Park, S., 2016 Apr 4, 2016 Symposium on Applied Computing, SAC 2016. Association for Computing Machinery, p. 1000-1007 8 p. (Proceedings of the ACM Symposium on Applied Computing; vol. 04-08-April-2016).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Query processing
Flash memory
Energy efficiency
Managers
Bandwidth

Recommend alternative drugs to minimize side-effect using generic name of drug

Hwang, S., Kim, J. & Park, S. H., 2016 Oct 17, Proceedings of the 6th International Conference on Emerging Databases: Technologies, Applications, and Theory, EDB 2016. Leung, C. K. (ed.). Association for Computing Machinery, p. 149-155 7 p. (ACM International Conference Proceeding Series).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Medicine

Replica parallelism to utilize the granularity of data

Choi, W. G. & Park, S. H., 2016 Oct 17, Proceedings of the 6th International Conference on Emerging Databases: Technologies, Applications, and Theory, EDB 2016. Leung, C. K. (ed.). Association for Computing Machinery, p. 35-42 8 p. (ACM International Conference Proceeding Series).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Random processes
Throughput
Big data
1 Citation (Scopus)

Take me to SSD: A hybrid block-selection method on HDFS based on storage type

Kim, M., Shin, M. & Park, S., 2016 Apr 4, 2016 Symposium on Applied Computing, SAC 2016. Association for Computing Machinery, p. 965-971 7 p. (Proceedings of the ACM Symposium on Applied Computing; vol. 04-08-April-2016).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Bandwidth
Big data
Experiments
2015
4 Citations (Scopus)

A literature-driven method to calculate similarities among diseases

Kim, H., Yoon, Y., Ahn, J. & Park, S. H., 2015 Nov 1, In : Computer Methods and Programs in Biomedicine. 122, 2, p. 108-122 15 p.

Research output: Contribution to journalArticle

Adrenergic Fibers
Genes
Fibers
Computational Biology
Research
5 Citations (Scopus)
MicroRNAs
Viruses
Alcohols
Tobacco Products
Radiation
2 Citations (Scopus)

BulkAligner: A novel sequence alignment algorithm based on graph theory and Trinity

Lee, J., Yeu, Y., Roh, H., Yoon, Y. & Park, S., 2015 May 10, In : Information sciences. 303, p. 120-133 14 p.

Research output: Contribution to journalArticle

Sequence Alignment
Graph theory
Alignment
Throughput
Sequencing

Inference of disease-specific gene interaction network using a Bayesian network learned by genetic algorithm

Jeong, D., Yeu, Y., Ahn, J., Yoon, Y. & Park, S., 2015 Apr 13, 2015 Symposium on Applied Computing, SAC 2015. Shin, D. (ed.). Association for Computing Machinery, p. 47-53 7 p. (Proceedings of the ACM Symposium on Applied Computing; vol. 13-17-April-2015).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Bayesian networks
Genes
Genetic algorithms
Microarrays
Nucleotides
4 Citations (Scopus)

Inverted index maintenance strategy for flashSSDs: Revitalization of in-place index update strategy

Jung, W., Roh, H., Shin, M. & Park, S., 2015 Apr, In : Information Systems. 49, p. 25-39 15 p.

Research output: Contribution to journalArticle

Query processing
Bandwidth
Information retrieval systems
Search engines
Energy efficiency
15 Citations (Scopus)

LGscore: A method to identify disease-related genes using biological literature and Google data

Kim, J., Kim, H., Yoon, Y. & Park, S. H., 2015 Apr 1, In : Journal of Biomedical Informatics. 54, p. 270-282 13 p.

Research output: Contribution to journalArticle

Genes
Gene Regulatory Networks
Lung Neoplasms
Prostatic Neoplasms
Weights and Measures
3 Citations (Scopus)

Protein localization vector propagation: a method for improving the accuracy of drug repositioning

Yeu, Y., Yoon, Y. & Park, S., 2015 Jul 1, In : Molecular BioSystems. 11, 7, p. 2096-2102 7 p.

Research output: Contribution to journalArticle

Drug Repositioning
Pharmaceutical Preparations
Protein Interaction Maps
Proteins
Drug Industry
2014
7 Citations (Scopus)

AS B-tree: A Study of an Efficient B+-tree for SSDs

Roh, H., Kim, S., Lee, D. & Park, S., 2014 Jan 1, In : Journal of Information Science and Engineering. 30, 1, p. 85-106 22 p.

Research output: Contribution to journalArticle

Flash memory
Laptop computers
writer
Mobile devices
Personal computers

Discovering phenotype specific gene module using a novel biclustering algorithm in colorectal cancer

Kim, J., Yoon, Y., Park, S., Ahn, J. & Yeu, Y., 2014 Dec 29, Proceedings - 2014 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2014. Zheng, H., Hu, X. T., Wang, Y., Hao, J-K., Gilbert, D., Berrar, D., Cho, K-H. & Dubitzky, W. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 201-204 4 p. 6999154. (Proceedings - 2014 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2014).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Gene Regulatory Networks
Colorectal Neoplasms
Genes
Phenotype
Cluster Analysis
17 Citations (Scopus)

Integrative gene network construction to analyze cancer recurrence using semi-supervised learning

Park, C., Ahn, J., Kim, H. & Park, S., 2014 Jan 31, In : PloS one. 9, 1, e86309.

Research output: Contribution to journalArticle

Gene Regulatory Networks
Supervised learning
learning
Genes
Recurrence
1 Citation (Scopus)

Shape-based retrieval of CNV regions in read coverage data

Hong, S., Yoon, J., Hong, D., Lee, U., Kim, B. & Park, S., 2014, In : International Journal of Data Mining and Bioinformatics. 9, 3, p. 254-276 23 p.

Research output: Contribution to journalArticle

Merging
coverage
Genes
Sampling
candidacy

TILD: A strategy to identify cancer-related genes using title information in literature data

Kim, J., Kim, H., Yeu, Y., Shin, M. & Park, S., 2014 Nov 7, DTMBIO 2014 - Proceedings of the ACM 8th International Workshop on Data and Text Mining in Bioinformatics, co-located with CIKM 2014. Association for Computing Machinery, Inc, 1 p. (DTMBIO 2014 - Proceedings of the ACM 8th International Workshop on Data and Text Mining in Bioinformatics, co-located with CIKM 2014).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Genes
2013

CORE: Common region extension based multiple protein structure alignment for producing multiple solution

Kim, W. C., Park, S. & Won, J. I., 2013 Jul 1, In : Journal of Computer Science and Technology. 28, 4, p. 647-656 10 p.

Research output: Contribution to journalArticle

Multiple Solutions
Protein Structure
Alignment
Proteins
Similarity Measure
2 Citations (Scopus)

ICP: A novel approach to predict prognosis of prostate cancer with inner-class clustering of gene expression data

Kim, H., Ahn, J., Park, C., Yoon, Y. & Park, S., 2013 Oct 1, In : Computers in Biology and Medicine. 43, 10, p. 1363-1373 11 p.

Research output: Contribution to journalArticle

Gene expression
Cluster Analysis
Prostatic Neoplasms
Gene Expression
Genes
2 Citations (Scopus)

Impact of TGF-b on breast cancer from a quantitative proteomic analysis

Ahn, J., Yoon, Y., Yeu, Y., Lee, H. & Park, S., 2013 Dec 1, In : Computers in Biology and Medicine. 43, 12, p. 2096-2102 7 p.

Research output: Contribution to journalArticle

Proteomics
Breast Neoplasms
Proteins
Genes
Proteome