• 1378 Citations
  • 17 h-Index
19992020
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Research Output 1999 2020

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Article
2020
Gene expression
Brain
Learning algorithms
Learning systems
Magnetic resonance
2019
2 Citations (Scopus)

ADC: Advanced document clustering using contextualized representations

Park, J., Park, C., Kim, J., Cho, M. & Park, S., 2019 Dec 15, In : Expert Systems with Applications. 137, p. 157-166 10 p.

Research output: Contribution to journalArticle

Natural language processing systems
Experiments
Feature extraction
Entropy
Semantics

A write-friendly approach to manage namespace of Hadoop distributed file system by utilizing nonvolatile memory

Choi, W. G. & Park, S., 2019 Oct 1, In : Journal of Supercomputing. 75, 10, p. 6632-6662 31 p.

Research output: Contribution to journalArticle

Distributed File System
Metadata
Data storage equipment
Flash memory
Hard disk storage
2 Citations (Scopus)

PMAMCA: Prediction of microRNA-disease association utilizing a matrix completion approach

Ha, J., Park, C. & Park, S., 2019 Mar 20, In : BMC Systems Biology. 13, 1, 33.

Research output: Contribution to journalArticle

Open Access
Matrix Completion
MicroRNA
MicroRNAs
Prediction
Biological Phenomena
2018

CASS: A distributed network clustering algorithm based on structure similarity for large-scale network

Kim, J., Shin, M., Kim, J., Park, C., Lee, S., Woo, J., Kim, H., Seo, D., Yu, S. & Park, S., 2018 Oct, In : PloS one. 13, 10, e0203670.

Research output: Contribution to journalArticle

Clustering algorithms
Cluster Analysis
Electric sparks
Data storage equipment
6-chloropenicillanic acid S-sulfoxide

Machine learning-based identification of genetic interactions from heterogeneous gene expression profiles

Park, C., Kim, J. R., Kim, J. & Park, S., 2018 Jul, In : PloS one. 13, 7, e0201056.

Research output: Contribution to journalArticle

artificial intelligence
Transcriptome
Gene expression
Learning systems
Identification (control systems)
3 Citations (Scopus)

MV-FTL: An FTL that provides page-level multi-version management

Lee, D., Shin, M., Choi, W., Roh, H. & Park, S., 2018 Jan, In : IEEE Transactions on Knowledge and Data Engineering. 30, 1, p. 87-100 14 p.

Research output: Contribution to journalArticle

Compaction
Industry
4 Citations (Scopus)

Selective I/O bypass and load balancing method for write-through SSD caching in big data analytics

Kim, J., Roh, H. & Park, S. H., 2018 Apr 1, In : IEEE Transactions on Computers. 67, 4, p. 589-595 7 p.

Research output: Contribution to journalArticle

Caching
Load Balancing
Resource allocation
Hard disk storage
Cache
2017
1 Citation (Scopus)

Advanced block nested loop join for extending SSD lifetime

Roh, H., Shin, M., Jung, W. & Park, S. H., 2017 Apr 1, In : IEEE Transactions on Knowledge and Data Engineering. 29, 4, p. 743-756 14 p., 7814205.

Research output: Contribution to journalArticle

Flash memory
Processing
Costs
Industry
4 Citations (Scopus)

IMA: Identifying disease-related genes using MeSH terms and association rules

Kim, J., Bang, C., Hwang, H., Kim, D., Park, C. & Park, S. H., 2017 Dec 1, In : Journal of Biomedical Informatics. 76, p. 110-123 14 p.

Research output: Contribution to journalArticle

Association rules
Genes
Prostatic Neoplasms
Gene Regulatory Networks
Stomach Neoplasms
11 Citations (Scopus)

Improved prediction of breast cancer outcome by identifying heterogeneous biomarkers

Choi, J., Park, S. H., Yoon, Y. & Ahn, J., 2017 Nov 15, In : Bioinformatics. 33, 22, p. 3619-3626 8 p.

Research output: Contribution to journalArticle

Biomarkers
Breast Cancer
Genes
Breast Neoplasms
Gene
1 Citation (Scopus)

Recommending alternative drugs by using generic drug names to minimise side effects

Hwang, S., Kim, J., Kim, J. & Park, S., 2017 Jan 1, In : International Journal of Data Mining and Bioinformatics. 18, 4, p. 301-314 14 p.

Research output: Contribution to journalArticle

Generic Drugs
Medicine
Names
drug
Processing
2016

Efficient processing of continuous queries utilizing F-relationship in stock databases

Park, S., Ha, Y. M., Park, C. & Kim, S. W., 2016 Jan, In : Computer Science and Information Systems. 13, 1, p. 131-149 19 p.

Research output: Contribution to journalArticle

Query processing
Processing
Experiments
Financial markets
4 Citations (Scopus)

External Mergesort for Flash-Based Solid State Drives

Lee, J., Roh, H. & Park, S., 2016 May 1, In : IEEE Transactions on Computers. 65, 5, p. 1518-1527 10 p., 7145402.

Research output: Contribution to journalArticle

Flash-based SSDs
Flash
Hard disk storage
Data storage equipment
Sorting
2015
4 Citations (Scopus)

A literature-driven method to calculate similarities among diseases

Kim, H., Yoon, Y., Ahn, J. & Park, S. H., 2015 Nov 1, In : Computer Methods and Programs in Biomedicine. 122, 2, p. 108-122 15 p.

Research output: Contribution to journalArticle

Adrenergic Fibers
Genes
Fibers
Computational Biology
Research
5 Citations (Scopus)
MicroRNAs
Viruses
Alcohols
Tobacco Products
Radiation
2 Citations (Scopus)

BulkAligner: A novel sequence alignment algorithm based on graph theory and Trinity

Lee, J., Yeu, Y., Roh, H., Yoon, Y. & Park, S., 2015 May 10, In : Information sciences. 303, p. 120-133 14 p.

Research output: Contribution to journalArticle

Sequence Alignment
Graph theory
Alignment
Throughput
Sequencing
4 Citations (Scopus)

Inverted index maintenance strategy for flashSSDs: Revitalization of in-place index update strategy

Jung, W., Roh, H., Shin, M. & Park, S., 2015 Apr, In : Information Systems. 49, p. 25-39 15 p.

Research output: Contribution to journalArticle

Query processing
Bandwidth
Information retrieval systems
Search engines
Energy efficiency
15 Citations (Scopus)

LGscore: A method to identify disease-related genes using biological literature and Google data

Kim, J., Kim, H., Yoon, Y. & Park, S. H., 2015 Apr 1, In : Journal of Biomedical Informatics. 54, p. 270-282 13 p.

Research output: Contribution to journalArticle

Genes
Gene Regulatory Networks
Lung Neoplasms
Prostatic Neoplasms
Weights and Measures
3 Citations (Scopus)

Protein localization vector propagation: a method for improving the accuracy of drug repositioning

Yeu, Y., Yoon, Y. & Park, S., 2015 Jul 1, In : Molecular BioSystems. 11, 7, p. 2096-2102 7 p.

Research output: Contribution to journalArticle

Drug Repositioning
Pharmaceutical Preparations
Protein Interaction Maps
Proteins
Drug Industry
2014
7 Citations (Scopus)

AS B-tree: A Study of an Efficient B+-tree for SSDs

Roh, H., Kim, S., Lee, D. & Park, S., 2014 Jan 1, In : Journal of Information Science and Engineering. 30, 1, p. 85-106 22 p.

Research output: Contribution to journalArticle

Flash memory
Laptop computers
writer
Mobile devices
Personal computers
17 Citations (Scopus)

Integrative gene network construction to analyze cancer recurrence using semi-supervised learning

Park, C., Ahn, J., Kim, H. & Park, S., 2014 Jan 31, In : PloS one. 9, 1, e86309.

Research output: Contribution to journalArticle

Gene Regulatory Networks
Supervised learning
learning
Genes
Recurrence
1 Citation (Scopus)

Shape-based retrieval of CNV regions in read coverage data

Hong, S., Yoon, J., Hong, D., Lee, U., Kim, B. & Park, S., 2014, In : International Journal of Data Mining and Bioinformatics. 9, 3, p. 254-276 23 p.

Research output: Contribution to journalArticle

Merging
coverage
Genes
Sampling
candidacy
2013

CORE: Common region extension based multiple protein structure alignment for producing multiple solution

Kim, W. C., Park, S. & Won, J. I., 2013 Jul 1, In : Journal of Computer Science and Technology. 28, 4, p. 647-656 10 p.

Research output: Contribution to journalArticle

Multiple Solutions
Protein Structure
Alignment
Proteins
Similarity Measure
2 Citations (Scopus)

ICP: A novel approach to predict prognosis of prostate cancer with inner-class clustering of gene expression data

Kim, H., Ahn, J., Park, C., Yoon, Y. & Park, S., 2013 Oct 1, In : Computers in Biology and Medicine. 43, 10, p. 1363-1373 11 p.

Research output: Contribution to journalArticle

Gene expression
Cluster Analysis
Prostatic Neoplasms
Gene Expression
Genes
2 Citations (Scopus)

Impact of TGF-b on breast cancer from a quantitative proteomic analysis

Ahn, J., Yoon, Y., Yeu, Y., Lee, H. & Park, S., 2013 Dec 1, In : Computers in Biology and Medicine. 43, 12, p. 2096-2102 7 p.

Research output: Contribution to journalArticle

Proteomics
Breast Neoplasms
Proteins
Genes
Proteome
4 Citations (Scopus)

Improved method for protein complex detection using bottleneck proteins

Ahn, J., Lee, D. H., Yoon, Y., Yeu, Y. & Park, S., 2013 Apr 12, In : BMC Medical Informatics and Decision Making. 13, SUPPL1, S5.

Research output: Contribution to journalArticle

Proteins
Protein Interaction Maps
Protein Databases
Information Services
Saccharomyces cerevisiae
1 Citation (Scopus)

One-dimensional spatial join processing using a DOT-based index structure

Won, J. L., Back, H., Yoon, J. H., Park, S. H. & Kim, S. W., 2013 Mar 1, In : Computer Systems Science and Engineering. 28, 2, p. 101-115 15 p.

Research output: Contribution to journalArticle

Join
Processing
Indexing
Spatial Index
Space-filling Curves
2012

CNV detection method optimized for high-resolution arrayCGH by normality test

Ahn, J., Yoon, Y., Park, C. & Park, S. H., 2012 Apr 1, In : Computers in Biology and Medicine. 42, 4, p. 468-473 6 p.

Research output: Contribution to journalArticle

Human Chromosomes
Costs and Cost Analysis
Chromosomes
Costs
2 Citations (Scopus)

Identification of functional CNV region networks using a CNV-gene mapping algorithm in a genome-wide scale

Park, C., Ahn, J., Yoon, Y. & Park, S., 2012 Aug 1, In : Bioinformatics. 28, 15, p. 2045-2051 7 p., bts318.

Research output: Contribution to journalArticle

Chromosome Mapping
Genome
Genes
Gene
HapMap Project
2011
4 Citations (Scopus)

A multi-sample based method for identifying common CNVs in normal human genomic structure using high-resolution aCGH data

Park, C., Ahn, J., Yoon, Y. & Park, S., 2011 Nov 4, In : PloS one. 6, 10, e26975.

Research output: Contribution to journalArticle

comparative genomic hybridization
Comparative Genomic Hybridization
Detectors
genomics
Noise
48 Citations (Scopus)

B+-tree index optimization by exploiting internal parallelism of flash-based solid state drives

Roh, H., Park, S., Kim, S., Shin, M. & Lee, S. W., 2011 Dec, In : Proceedings of the VLDB Endowment. 5, 4, p. 286-297 12 p.

Research output: Contribution to journalArticle

Flash-based SSDs

Extraction of informative genes from multiple microarray data integrated by rank-based approach

Hong, D., Yoon, J., Lee, J., Park, S. & Kim, J., 2011 Apr, In : IEICE Transactions on Information and Systems. E94-D, 4, p. 841-854 14 p.

Research output: Contribution to journalArticle

Microarrays
Genes
Data integration

HapEdit: An accuracy assessment viewer for haplotype assembly using massively parallel DNA-sequencing technologies

Kim, J. H., Kim, W. C., Li, L. M. & Park, S., 2011 Jul 1, In : Nucleic acids research. 39, SUPPL. 2, p. W557-W561

Research output: Contribution to journalArticle

High-Throughput Nucleotide Sequencing
DNA Sequence Analysis
Haplotypes
Technology
Costs and Cost Analysis
30 Citations (Scopus)

Integrative gene network construction for predicting a set of complementary prostate cancer genes

Ahn, J., Yoon, Y., Park, C., Shin, E. & Park, S., 2011 Jul 1, In : Bioinformatics. 27, 13, p. 1846-1853 8 p., btr283.

Research output: Contribution to journalArticle

Prostate Cancer
Gene Networks
Gene Regulatory Networks
Neoplasm Genes
Prostatic Neoplasms
13 Citations (Scopus)

Noise-robust algorithm for identifying functionally associated biclusters from gene expression data

Ahn, J., Yoon, Y. & Park, S., 2011 Feb 1, In : Information sciences. 181, 3, p. 435-449 15 p.

Research output: Contribution to journalArticle

Robust Algorithm
Gene Expression Data
Gene expression
Genes
Gene
6 Citations (Scopus)

TC-VGC: A Tumor Classification System using Variations in Genes' Correlation

Shin, E., Yoon, Y., Ahn, J. & Park, S., 2011 Dec 1, In : Computer Methods and Programs in Biomedicine. 104, 3, p. e87-e101

Research output: Contribution to journalArticle

Tumors
Genes
Neoplasm Genes
Neoplasms
Prostatic Neoplasms
2010
1 Citation (Scopus)

Efficient processing of spatial joins with DOT-based indexing

Back, H., Won, J. I., Yoon, J. H., Park, S. H. & Kim, S. W., 2010 Apr 15, In : Information Sciences. 180, 8, p. 1292-1312 21 p.

Research output: Contribution to journalArticle

Indexing
Join
Processing
Range Query
Division
11 Citations (Scopus)
Microarrays
Classifiers
Genes
Labels
Experiments
2009
11 Citations (Scopus)

A B-Tree index extension to enhance response time and the life cycle of flash memory

Roh, H., Kim, W. C., Kim, S. & Park, S., 2009 Aug 21, In : Information sciences. 179, 18, p. 3136-3161 26 p.

Research output: Contribution to journalArticle

B-tree
Flash Memory
Flash memory
Life Cycle
Response Time
6 Citations (Scopus)

A stock recommendation system exploiting rule discovery in stock databases

Ha, Y. M., Park, S., Kim, S. W., Won, J. I. & Yoon, J. H., 2009 Jul 1, In : Information and Software Technology. 51, 7, p. 1140-1149 10 p.

Research output: Contribution to journalArticle

Recommender systems
Experiments
2 Citations (Scopus)

HAPLOWSER: A whole-genome haplotype browser for personal genome and metagenome

Kim, J. H., Kim, W. C., Waterman, M. S., Park, S. & Li, L. M., 2009 Sep 1, In : Bioinformatics. 25, 18, p. 2430-2431 2 p.

Research output: Contribution to journalArticle

Metagenome
Haplotype
Haplotypes
Genome
Genes
2008
9 Citations (Scopus)

An efficient frequent melody indexing method to improve the performance of query-by-humming systems

You, J., Park, S. & Kim, I., 2008 Dec 1, In : Journal of Information Science. 34, 6, p. 777-798 22 p.

Research output: Contribution to journalArticle

indexing
performance
Experiments
music
experiment
26 Citations (Scopus)
Ubiquitous computing
Ad hoc networks
Linear programming
Profitability
14 Citations (Scopus)

Direct integration of microarrays for selecting informative genes and phenotype classification

Yoon, Y., Lee, J., Park, S., Bien, S., Chung, H. C. & Rha, S. Y., 2008 Jan 2, In : Information sciences. 178, 1, p. 88-105 18 p.

Research output: Contribution to journalArticle

Microarrays
Microarray
Phenotype
Genes
Gene
19 Citations (Scopus)

Image retrieval model based on weighted visual features determined by relevance feedback

Kim, W. C., Song, J. Y., Kim, S. W. & Park, S., 2008 Nov 15, In : Information sciences. 178, 22, p. 4301-4313 13 p.

Research output: Contribution to journalArticle

Relevance Feedback
Image retrieval
Image Retrieval
Model-based
Feedback

Physical database design for efficient time-series similarity search

Kim, S. W., Kim, J. & Park, S., 2008 Jan 1, In : IEICE Transactions on Communications. E91-B, 4, p. 1251-1254 4 p.

Research output: Contribution to journalArticle

Discrete Fourier transforms
Time series
Processing
Costs
Experiments
31 Citations (Scopus)

Privacy preserving data mining of sequential patterns for network traffic data

Kim, S. W., Park, S. H., Won, J. I. & Kim, S. W., 2008 Feb 1, In : Information Sciences. 178, 3, p. 694-713 20 p.

Research output: Contribution to journalArticle

Privacy Preserving Data Mining
Sequential Patterns
Network Traffic
Data mining
Servers
2007
4 Citations (Scopus)

ACE-INPUTS: A cost-effective intelligent public transportation system

Lee, J., Park, S., Seo, M. & Kim, S. W., 2007 Aug, In : IEICE Transactions on Information and Systems. E90-D, 8, p. 1251-1261 11 p.

Research output: Contribution to journalArticle

Servers
Mobile devices
Costs
Communication
Location based services
5 Citations (Scopus)

A multi-dimensional indexing approach for timestamped event sequence matching

Park, S., Won, J. I., Yoon, J. H. & Kim, S. W., 2007 Nov 15, In : Information sciences. 177, 22, p. 4859-4876 18 p.

Research output: Contribution to journalArticle

Indexing
R-tree
Experiments
Dimensionality
Time Windows