200+ Protein Concentrations in Healthy Human Blood Plasma

Targeted Quantitative SRM SIS Screening of Chromosomes 18, 13, Y, and the Mitochondrial Chromosome Encoded Proteome

Arthur T. Kopylov, Elena A. Ponomarenko, Ekaterina V. Ilgisonis, Mikhail A. Pyatnitskiy, Andrey V. Lisitsa, Ekaterina V. Poverennaya, Olga I. Kiseleva, Tatiana E. Farafonova, Olga V. Tikhonova, Maria G. Zavialova, Svetlana E. Novikova, Sergey A. Moshkovskii, Sergey P. Radko, Boris V. Morukov, Anatoly I. Grigoriev, Young-Ki Paik, Ghasem Hosseini Salekdeh, Andrea Urbani, Victor G. Zgoda, Alexander I. Archakov

Research output: Contribution to journalArticle

Abstract

This work continues the series of the quantitative measurements of the proteins encoded by different chromosomes in the blood plasma of a healthy person. Selected Reaction Monitoring with Stable Isotope-labeled peptide Standards (SRM SIS) and a gene-centric approach, which is the basis for the implementation of the international Chromosome-centric Human Proteome Project (C-HPP), were applied for the quantitative measurement of proteins in human blood plasma. Analyses were carried out in the frame of C-HPP for each protein-coding gene of the four human chromosomes: 18, 13, Y, and mitochondrial. Concentrations of proteins encoded by 667 genes were measured in 54 blood plasma samples of the volunteers, whose health conditions were consistent with requirements for astronauts. The gene list included 276, 329, 47, and 15 genes of chromosomes 18, 13, Y, and the mitochondrial chromosome, respectively. This paper does not make claims about the detection of missing proteins. Only 205 proteins (30.7%) were detected in the samples. Of them, 84, 106, 10, and 5 belonged to chromosomes 18, 13, and Y and the mitochondrial chromosome, respectively. Each detected protein was found in at least one of the samples analyzed. The SRM SIS raw data are available in the ProteomeXchange repository (PXD004374, PASS01192).

Original languageEnglish
Pages (from-to)120-129
Number of pages10
JournalJournal of Proteome Research
Volume18
Issue number1
DOIs
Publication statusPublished - 2019 Jan 4

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Chromosomes, Human, Pair 18
Chromosomes, Human, Pair 13
Y Chromosome
Proteome
Chromosomes
Isotopes
Screening
Blood
Plasmas
Peptides
Monitoring
Genes
Human Chromosomes
Proteins
Astronauts
Volunteers
Health

All Science Journal Classification (ASJC) codes

  • Biochemistry
  • Chemistry(all)

Cite this

Kopylov, Arthur T. ; Ponomarenko, Elena A. ; Ilgisonis, Ekaterina V. ; Pyatnitskiy, Mikhail A. ; Lisitsa, Andrey V. ; Poverennaya, Ekaterina V. ; Kiseleva, Olga I. ; Farafonova, Tatiana E. ; Tikhonova, Olga V. ; Zavialova, Maria G. ; Novikova, Svetlana E. ; Moshkovskii, Sergey A. ; Radko, Sergey P. ; Morukov, Boris V. ; Grigoriev, Anatoly I. ; Paik, Young-Ki ; Salekdeh, Ghasem Hosseini ; Urbani, Andrea ; Zgoda, Victor G. ; Archakov, Alexander I. / 200+ Protein Concentrations in Healthy Human Blood Plasma : Targeted Quantitative SRM SIS Screening of Chromosomes 18, 13, Y, and the Mitochondrial Chromosome Encoded Proteome. In: Journal of Proteome Research. 2019 ; Vol. 18, No. 1. pp. 120-129.
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abstract = "This work continues the series of the quantitative measurements of the proteins encoded by different chromosomes in the blood plasma of a healthy person. Selected Reaction Monitoring with Stable Isotope-labeled peptide Standards (SRM SIS) and a gene-centric approach, which is the basis for the implementation of the international Chromosome-centric Human Proteome Project (C-HPP), were applied for the quantitative measurement of proteins in human blood plasma. Analyses were carried out in the frame of C-HPP for each protein-coding gene of the four human chromosomes: 18, 13, Y, and mitochondrial. Concentrations of proteins encoded by 667 genes were measured in 54 blood plasma samples of the volunteers, whose health conditions were consistent with requirements for astronauts. The gene list included 276, 329, 47, and 15 genes of chromosomes 18, 13, Y, and the mitochondrial chromosome, respectively. This paper does not make claims about the detection of missing proteins. Only 205 proteins (30.7{\%}) were detected in the samples. Of them, 84, 106, 10, and 5 belonged to chromosomes 18, 13, and Y and the mitochondrial chromosome, respectively. Each detected protein was found in at least one of the samples analyzed. The SRM SIS raw data are available in the ProteomeXchange repository (PXD004374, PASS01192).",
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Kopylov, AT, Ponomarenko, EA, Ilgisonis, EV, Pyatnitskiy, MA, Lisitsa, AV, Poverennaya, EV, Kiseleva, OI, Farafonova, TE, Tikhonova, OV, Zavialova, MG, Novikova, SE, Moshkovskii, SA, Radko, SP, Morukov, BV, Grigoriev, AI, Paik, Y-K, Salekdeh, GH, Urbani, A, Zgoda, VG & Archakov, AI 2019, '200+ Protein Concentrations in Healthy Human Blood Plasma: Targeted Quantitative SRM SIS Screening of Chromosomes 18, 13, Y, and the Mitochondrial Chromosome Encoded Proteome', Journal of Proteome Research, vol. 18, no. 1, pp. 120-129. https://doi.org/10.1021/acs.jproteome.8b00391

200+ Protein Concentrations in Healthy Human Blood Plasma : Targeted Quantitative SRM SIS Screening of Chromosomes 18, 13, Y, and the Mitochondrial Chromosome Encoded Proteome. / Kopylov, Arthur T.; Ponomarenko, Elena A.; Ilgisonis, Ekaterina V.; Pyatnitskiy, Mikhail A.; Lisitsa, Andrey V.; Poverennaya, Ekaterina V.; Kiseleva, Olga I.; Farafonova, Tatiana E.; Tikhonova, Olga V.; Zavialova, Maria G.; Novikova, Svetlana E.; Moshkovskii, Sergey A.; Radko, Sergey P.; Morukov, Boris V.; Grigoriev, Anatoly I.; Paik, Young-Ki; Salekdeh, Ghasem Hosseini; Urbani, Andrea; Zgoda, Victor G.; Archakov, Alexander I.

In: Journal of Proteome Research, Vol. 18, No. 1, 04.01.2019, p. 120-129.

Research output: Contribution to journalArticle

TY - JOUR

T1 - 200+ Protein Concentrations in Healthy Human Blood Plasma

T2 - Targeted Quantitative SRM SIS Screening of Chromosomes 18, 13, Y, and the Mitochondrial Chromosome Encoded Proteome

AU - Kopylov, Arthur T.

AU - Ponomarenko, Elena A.

AU - Ilgisonis, Ekaterina V.

AU - Pyatnitskiy, Mikhail A.

AU - Lisitsa, Andrey V.

AU - Poverennaya, Ekaterina V.

AU - Kiseleva, Olga I.

AU - Farafonova, Tatiana E.

AU - Tikhonova, Olga V.

AU - Zavialova, Maria G.

AU - Novikova, Svetlana E.

AU - Moshkovskii, Sergey A.

AU - Radko, Sergey P.

AU - Morukov, Boris V.

AU - Grigoriev, Anatoly I.

AU - Paik, Young-Ki

AU - Salekdeh, Ghasem Hosseini

AU - Urbani, Andrea

AU - Zgoda, Victor G.

AU - Archakov, Alexander I.

PY - 2019/1/4

Y1 - 2019/1/4

N2 - This work continues the series of the quantitative measurements of the proteins encoded by different chromosomes in the blood plasma of a healthy person. Selected Reaction Monitoring with Stable Isotope-labeled peptide Standards (SRM SIS) and a gene-centric approach, which is the basis for the implementation of the international Chromosome-centric Human Proteome Project (C-HPP), were applied for the quantitative measurement of proteins in human blood plasma. Analyses were carried out in the frame of C-HPP for each protein-coding gene of the four human chromosomes: 18, 13, Y, and mitochondrial. Concentrations of proteins encoded by 667 genes were measured in 54 blood plasma samples of the volunteers, whose health conditions were consistent with requirements for astronauts. The gene list included 276, 329, 47, and 15 genes of chromosomes 18, 13, Y, and the mitochondrial chromosome, respectively. This paper does not make claims about the detection of missing proteins. Only 205 proteins (30.7%) were detected in the samples. Of them, 84, 106, 10, and 5 belonged to chromosomes 18, 13, and Y and the mitochondrial chromosome, respectively. Each detected protein was found in at least one of the samples analyzed. The SRM SIS raw data are available in the ProteomeXchange repository (PXD004374, PASS01192).

AB - This work continues the series of the quantitative measurements of the proteins encoded by different chromosomes in the blood plasma of a healthy person. Selected Reaction Monitoring with Stable Isotope-labeled peptide Standards (SRM SIS) and a gene-centric approach, which is the basis for the implementation of the international Chromosome-centric Human Proteome Project (C-HPP), were applied for the quantitative measurement of proteins in human blood plasma. Analyses were carried out in the frame of C-HPP for each protein-coding gene of the four human chromosomes: 18, 13, Y, and mitochondrial. Concentrations of proteins encoded by 667 genes were measured in 54 blood plasma samples of the volunteers, whose health conditions were consistent with requirements for astronauts. The gene list included 276, 329, 47, and 15 genes of chromosomes 18, 13, Y, and the mitochondrial chromosome, respectively. This paper does not make claims about the detection of missing proteins. Only 205 proteins (30.7%) were detected in the samples. Of them, 84, 106, 10, and 5 belonged to chromosomes 18, 13, and Y and the mitochondrial chromosome, respectively. Each detected protein was found in at least one of the samples analyzed. The SRM SIS raw data are available in the ProteomeXchange repository (PXD004374, PASS01192).

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U2 - 10.1021/acs.jproteome.8b00391

DO - 10.1021/acs.jproteome.8b00391

M3 - Article

VL - 18

SP - 120

EP - 129

JO - Journal of Proteome Research

JF - Journal of Proteome Research

SN - 1535-3893

IS - 1

ER -