Advances in the Chromosome-Centric Human Proteome Project: looking to the future

Young Ki Paik, Gilbert S. Omenn, William S. Hancock, Lydie Lane, Christopher M. Overall

Research output: Contribution to journalReview article

13 Citations (Scopus)

Abstract

Introduction: The mission of the Chromosome-Centric Human Proteome Project (C-HPP), is to map and annotate the entire predicted human protein set (~20,000 proteins) encoded by each chromosome. The initial steps of the project are focused on ‘missing proteins (MPs)’, which lacked documented evidence for existence at protein level. In addition to remaining 2,579 MPs, we also target those annotated proteins having unknown functions, uPE1 proteins, alternative splice isoforms and post-translational modifications. We also consider how to investigate various protein functions involved in cis-regulatory phenomena, amplicons lncRNAs and smORFs. Areas covered: We will cover the scope, historic background, progress, challenges and future prospects of C-HPP. This review also addresses the question of how we can best improve the methodological approaches, select the optimal biological samples, and recommend stringent protocols for the identification and characterization of MPs. A new strategy for functional analysis of some of those annotated proteins having unknown function will also be discussed. Expert commentary: If the project moves well by reshaping the original goals, the current working modules and team work in the proposed extended planning period, it is anticipated that a progressively more detailed draft of an accurate chromosome-based proteome map will become available with functional information.

Original languageEnglish
Pages (from-to)1059-1071
Number of pages13
JournalExpert Review of Proteomics
Volume14
Issue number12
DOIs
Publication statusPublished - 2017 Dec 2

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Human Chromosomes
Proteome
Chromosomes
Proteins
Long Noncoding RNA
Functional analysis
Staphylococcal Protein A
Post Translational Protein Processing
Protein Isoforms
Planning

All Science Journal Classification (ASJC) codes

  • Biochemistry
  • Molecular Biology

Cite this

Paik, Young Ki ; Omenn, Gilbert S. ; Hancock, William S. ; Lane, Lydie ; Overall, Christopher M. / Advances in the Chromosome-Centric Human Proteome Project : looking to the future. In: Expert Review of Proteomics. 2017 ; Vol. 14, No. 12. pp. 1059-1071.
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Advances in the Chromosome-Centric Human Proteome Project : looking to the future. / Paik, Young Ki; Omenn, Gilbert S.; Hancock, William S.; Lane, Lydie; Overall, Christopher M.

In: Expert Review of Proteomics, Vol. 14, No. 12, 02.12.2017, p. 1059-1071.

Research output: Contribution to journalReview article

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