### Abstract

The inversion is one of the important operations in bio sequence analysis and the sequence alignment problem is well-studied for efficient bio sequence comparisons. Based on inversion operations, we introduce the alignment with non-overlapping inversion problem: Given two strings x and y, does there exist an alignment with non-overlapping inversions for x and y. We, in particular, consider the alignment problem when non-overlapping inversions are allowed for both x and y. We design an efficient algorithm that determines the existence of non-overlapping inversions and present another efficient algorithm that retrieves such an alignment, if exists.

Original language | English |
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Title of host publication | Algorithms and Computation - 8th International Workshop, WALCOM 2014, Proceedings |

Publisher | Springer Verlag |

Pages | 261-272 |

Number of pages | 12 |

ISBN (Print) | 9783319046563 |

DOIs | |

Publication status | Published - 2014 Jan 1 |

Event | 8th International Workshop on Algorithms and Computation, WALCOM 2014 - Chennai, India Duration: 2014 Feb 13 → 2014 Feb 15 |

### Publication series

Name | Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) |
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Volume | 8344 LNCS |

ISSN (Print) | 0302-9743 |

ISSN (Electronic) | 1611-3349 |

### Other

Other | 8th International Workshop on Algorithms and Computation, WALCOM 2014 |
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Country | India |

City | Chennai |

Period | 14/2/13 → 14/2/15 |

### Fingerprint

### All Science Journal Classification (ASJC) codes

- Theoretical Computer Science
- Computer Science(all)

### Cite this

*Algorithms and Computation - 8th International Workshop, WALCOM 2014, Proceedings*(pp. 261-272). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 8344 LNCS). Springer Verlag. https://doi.org/10.1007/978-3-319-04657-0_25

}

*Algorithms and Computation - 8th International Workshop, WALCOM 2014, Proceedings.*Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), vol. 8344 LNCS, Springer Verlag, pp. 261-272, 8th International Workshop on Algorithms and Computation, WALCOM 2014, Chennai, India, 14/2/13. https://doi.org/10.1007/978-3-319-04657-0_25

**Alignment with non-overlapping inversions on two strings.** / Cho, Da Jung; Han, Yo Sub; Kim, Hwee.

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

TY - GEN

T1 - Alignment with non-overlapping inversions on two strings

AU - Cho, Da Jung

AU - Han, Yo Sub

AU - Kim, Hwee

PY - 2014/1/1

Y1 - 2014/1/1

N2 - The inversion is one of the important operations in bio sequence analysis and the sequence alignment problem is well-studied for efficient bio sequence comparisons. Based on inversion operations, we introduce the alignment with non-overlapping inversion problem: Given two strings x and y, does there exist an alignment with non-overlapping inversions for x and y. We, in particular, consider the alignment problem when non-overlapping inversions are allowed for both x and y. We design an efficient algorithm that determines the existence of non-overlapping inversions and present another efficient algorithm that retrieves such an alignment, if exists.

AB - The inversion is one of the important operations in bio sequence analysis and the sequence alignment problem is well-studied for efficient bio sequence comparisons. Based on inversion operations, we introduce the alignment with non-overlapping inversion problem: Given two strings x and y, does there exist an alignment with non-overlapping inversions for x and y. We, in particular, consider the alignment problem when non-overlapping inversions are allowed for both x and y. We design an efficient algorithm that determines the existence of non-overlapping inversions and present another efficient algorithm that retrieves such an alignment, if exists.

UR - http://www.scopus.com/inward/record.url?scp=84958551735&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=84958551735&partnerID=8YFLogxK

U2 - 10.1007/978-3-319-04657-0_25

DO - 10.1007/978-3-319-04657-0_25

M3 - Conference contribution

AN - SCOPUS:84958551735

SN - 9783319046563

T3 - Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

SP - 261

EP - 272

BT - Algorithms and Computation - 8th International Workshop, WALCOM 2014, Proceedings

PB - Springer Verlag

ER -