Abstract
The inversion is one of the important operations in bio sequence analysis and the sequence alignment problem is well-studied for efficient bio sequence comparisons. Based on inversion operations, we introduce the alignment with non-overlapping inversion problem: Given two strings x and y, does there exist an alignment with non-overlapping inversions for x and y. We, in particular, consider the alignment problem when non-overlapping inversions are allowed for both x and y. We design an efficient algorithm that determines the existence of non-overlapping inversions and present another efficient algorithm that retrieves such an alignment, if exists.
| Original language | English |
|---|---|
| Title of host publication | Algorithms and Computation - 8th International Workshop, WALCOM 2014, Proceedings |
| Publisher | Springer Verlag |
| Pages | 261-272 |
| Number of pages | 12 |
| Volume | 8344 LNCS |
| ISBN (Print) | 9783319046563 |
| DOIs | |
| Publication status | Published - 2014 Jan 1 |
| Event | 8th International Workshop on Algorithms and Computation, WALCOM 2014 - Chennai, India Duration: 2014 Feb 13 → 2014 Feb 15 |
Publication series
| Name | Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) |
|---|---|
| Volume | 8344 LNCS |
| ISSN (Print) | 0302-9743 |
| ISSN (Electronic) | 1611-3349 |
Other
| Other | 8th International Workshop on Algorithms and Computation, WALCOM 2014 |
|---|---|
| Country | India |
| City | Chennai |
| Period | 14/2/13 → 14/2/15 |
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All Science Journal Classification (ASJC) codes
- Theoretical Computer Science
- Computer Science(all)
Cite this
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Alignment with non-overlapping inversions on two strings. / Cho, Da Jung; Han, Yo Sub; Kim, Hwee.
Algorithms and Computation - 8th International Workshop, WALCOM 2014, Proceedings. Vol. 8344 LNCS Springer Verlag, 2014. p. 261-272 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 8344 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
TY - GEN
T1 - Alignment with non-overlapping inversions on two strings
AU - Cho, Da Jung
AU - Han, Yo Sub
AU - Kim, Hwee
PY - 2014/1/1
Y1 - 2014/1/1
N2 - The inversion is one of the important operations in bio sequence analysis and the sequence alignment problem is well-studied for efficient bio sequence comparisons. Based on inversion operations, we introduce the alignment with non-overlapping inversion problem: Given two strings x and y, does there exist an alignment with non-overlapping inversions for x and y. We, in particular, consider the alignment problem when non-overlapping inversions are allowed for both x and y. We design an efficient algorithm that determines the existence of non-overlapping inversions and present another efficient algorithm that retrieves such an alignment, if exists.
AB - The inversion is one of the important operations in bio sequence analysis and the sequence alignment problem is well-studied for efficient bio sequence comparisons. Based on inversion operations, we introduce the alignment with non-overlapping inversion problem: Given two strings x and y, does there exist an alignment with non-overlapping inversions for x and y. We, in particular, consider the alignment problem when non-overlapping inversions are allowed for both x and y. We design an efficient algorithm that determines the existence of non-overlapping inversions and present another efficient algorithm that retrieves such an alignment, if exists.
UR - http://www.scopus.com/inward/record.url?scp=84958551735&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=84958551735&partnerID=8YFLogxK
U2 - 10.1007/978-3-319-04657-0_25
DO - 10.1007/978-3-319-04657-0_25
M3 - Conference contribution
SN - 9783319046563
VL - 8344 LNCS
T3 - Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
SP - 261
EP - 272
BT - Algorithms and Computation - 8th International Workshop, WALCOM 2014, Proceedings
PB - Springer Verlag
ER -