Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe

Dong Uk Kim, Jacqueline Hayles, Dongsup Kim, Valerie Wood, Han Oh Park, Misun Won, Hyang Sook Yoo, Trevor Duhig, Miyoung Nam, Georgia Palmer, Sangjo Han, Linda Jeffery, Seung Tae Baek, Hyemi Lee, Young Sam Shim, Minho Lee, Lila Kim, Kyung Sun Heo, Eun Joo Noh, Ah Reum Lee & 17 others Young Joo Jang, Kyung Sook Chung, Shin Jung Choi, Jo Young Park, Youngwoo Park, Hwan Mook Kim, Song Kyu Park, Hae Joon Park, Eun Jung Kang, Hyong Bai Kim, Hyun Sam Kang, Hee Moon Park, Kyunghoon Kim, Kiwon Song, Kyung Bin Song, Paul Nurse, Kwang Lae Hoe

Research output: Contribution to journalArticle

383 Citations (Scopus)

Abstract

We report the construction and analysis of 4,836 heterozygous diploid deletion mutants covering 98.4% of the fission yeast genome providing a tool for studying eukaryotic biology. Comprehensive gene dispensability comparisons with budding yeastthe only other eukaryote for which a comprehensive knockout library existsrevealed that 83% of single-copy orthologs in the two yeasts had conserved dispensability. Gene dispensability differed for certain pathways between the two yeasts, including mitochondrial translation and cell cycle checkpoint control. We show that fission yeast has more essential genes than budding yeast and that essential genes are more likely than nonessential genes to be present in a single copy, to be broadly conserved and to contain introns. Growth fitness analyses determined sets of haploinsufficient and haploproficient genes for fission yeast, and comparisons with budding yeast identified specific ribosomal proteins and RNA polymerase subunits, which may act more generally to regulate eukaryotic cell growth.

Original languageEnglish
Pages (from-to)617-623
Number of pages7
JournalNature Biotechnology
Volume28
Issue number6
DOIs
Publication statusPublished - 2010 Jun 1

Fingerprint

Schizosaccharomyces
Gene Deletion
Yeast
Genes
Genome
Saccharomycetales
Essential Genes
Cell Cycle Checkpoints
Yeasts
Ribosomal RNA
Ribosomal Proteins
Eukaryotic Cells
DNA-Directed RNA Polymerases
Growth
Eukaryota
Diploidy
Introns
Libraries
Cell growth
RNA

All Science Journal Classification (ASJC) codes

  • Biotechnology
  • Bioengineering
  • Applied Microbiology and Biotechnology
  • Molecular Medicine
  • Biomedical Engineering

Cite this

Kim, D. U., Hayles, J., Kim, D., Wood, V., Park, H. O., Won, M., ... Hoe, K. L. (2010). Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe. Nature Biotechnology, 28(6), 617-623. https://doi.org/10.1038/nbt.1628
Kim, Dong Uk ; Hayles, Jacqueline ; Kim, Dongsup ; Wood, Valerie ; Park, Han Oh ; Won, Misun ; Yoo, Hyang Sook ; Duhig, Trevor ; Nam, Miyoung ; Palmer, Georgia ; Han, Sangjo ; Jeffery, Linda ; Baek, Seung Tae ; Lee, Hyemi ; Shim, Young Sam ; Lee, Minho ; Kim, Lila ; Heo, Kyung Sun ; Noh, Eun Joo ; Lee, Ah Reum ; Jang, Young Joo ; Chung, Kyung Sook ; Choi, Shin Jung ; Park, Jo Young ; Park, Youngwoo ; Kim, Hwan Mook ; Park, Song Kyu ; Park, Hae Joon ; Kang, Eun Jung ; Kim, Hyong Bai ; Kang, Hyun Sam ; Park, Hee Moon ; Kim, Kyunghoon ; Song, Kiwon ; Song, Kyung Bin ; Nurse, Paul ; Hoe, Kwang Lae. / Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe. In: Nature Biotechnology. 2010 ; Vol. 28, No. 6. pp. 617-623.
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Kim, DU, Hayles, J, Kim, D, Wood, V, Park, HO, Won, M, Yoo, HS, Duhig, T, Nam, M, Palmer, G, Han, S, Jeffery, L, Baek, ST, Lee, H, Shim, YS, Lee, M, Kim, L, Heo, KS, Noh, EJ, Lee, AR, Jang, YJ, Chung, KS, Choi, SJ, Park, JY, Park, Y, Kim, HM, Park, SK, Park, HJ, Kang, EJ, Kim, HB, Kang, HS, Park, HM, Kim, K, Song, K, Song, KB, Nurse, P & Hoe, KL 2010, 'Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe', Nature Biotechnology, vol. 28, no. 6, pp. 617-623. https://doi.org/10.1038/nbt.1628

Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe. / Kim, Dong Uk; Hayles, Jacqueline; Kim, Dongsup; Wood, Valerie; Park, Han Oh; Won, Misun; Yoo, Hyang Sook; Duhig, Trevor; Nam, Miyoung; Palmer, Georgia; Han, Sangjo; Jeffery, Linda; Baek, Seung Tae; Lee, Hyemi; Shim, Young Sam; Lee, Minho; Kim, Lila; Heo, Kyung Sun; Noh, Eun Joo; Lee, Ah Reum; Jang, Young Joo; Chung, Kyung Sook; Choi, Shin Jung; Park, Jo Young; Park, Youngwoo; Kim, Hwan Mook; Park, Song Kyu; Park, Hae Joon; Kang, Eun Jung; Kim, Hyong Bai; Kang, Hyun Sam; Park, Hee Moon; Kim, Kyunghoon; Song, Kiwon; Song, Kyung Bin; Nurse, Paul; Hoe, Kwang Lae.

In: Nature Biotechnology, Vol. 28, No. 6, 01.06.2010, p. 617-623.

Research output: Contribution to journalArticle

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AU - Kim, Hyong Bai

AU - Kang, Hyun Sam

AU - Park, Hee Moon

AU - Kim, Kyunghoon

AU - Song, Kiwon

AU - Song, Kyung Bin

AU - Nurse, Paul

AU - Hoe, Kwang Lae

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