Automatic segmentation of corneal deposits from corneal stromal dystrophy images via deep learning

Mihir Deshmukh, Yu Chi Liu, Tyler Hyungtaek Rim, Anandalakshmi Venkatraman, Matthew Davidson, Marco Yu, Hong Seok Kim, Geunyoung Lee, Ikhyun Jun, Jodhbir S. Mehta, Eung Kweon Kim

Research output: Contribution to journalArticlepeer-review

3 Citations (Scopus)


Background: Granular dystrophy is the most common stromal dystrophy. To perform automated segmentation of corneal stromal deposits, we trained and tested a deep learning (DL) algorithm from patients with corneal stromal dystrophy and compared its performance with human segmentation. Methods: In this retrospective cross-sectional study, we included slit-lamp photographs by sclerotic scatter from patients with corneal stromal dystrophy and real-world slit-lamp photographs via various techniques (diffuse illumination, tangential illumination, and sclerotic scatter). Our data set included 1007 slit-lamp photographs of semi-automatically generated handcraft masks on granular and linear lesions from corneal stromal dystrophy patients (806 for the training set and 201 for test set). For external test (140 photographs), we applied the DL algorithm and compared between automated and human segmentation. For performance, we estimated the intersection of union (IoU), global accuracy, and boundary F1 (BF) score for segmentation. Results: In 201 internal test set, IoU, global accuracy, and BF score with 95 % confidence Interval were 0.81 (0.79–0.82), 0.99 (0.98–0.99), and 0.93 (0.92–0.95), respectively. In 140 heterogenous external test set as a real-world data, those were 0.64 (0.61–0.67), 0.95 (0.94–0.96), and 0.70 (0.64–0.76) via DL algorithm and 0.56 (0.51–0.61), 0.95 (0.94–0.96), and 0.70 (0.65–0.74) via human rater, respectively. Conclusions: We developed an automated segmentation DL algorithm for corneal stromal deposits in patients with corneal stromal dystrophy. Segmentation on corneal deposits was accurate via the DL algorithm in the well-controlled dataset and showed reasonable performance in a real-world setting. We suggest this automatic segmentation of corneal deposits helps to monitor the disease and can evaluate possible new treatments.

Original languageEnglish
Article number104675
JournalComputers in Biology and Medicine
Publication statusPublished - 2021 Oct

Bibliographical note

Funding Information:
The study was funded by SingHealth Duke-NUS AM (AM-NHIC/JMT010/2020/SRDUKAMR20M0).

Publisher Copyright:
© 2021 Elsevier Ltd

All Science Journal Classification (ASJC) codes

  • Computer Science Applications
  • Health Informatics


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