Crystallographic characterization of helical secondary structures in α/β-peptides with 1:1 residue alternation

Hyuk Choi Soo, Ilia A. Guzei, Lara C. Spencer, Samuel H. Gellman

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Abstract

Oligomers that contain both α- and β-amino acid residues in a 1:1 alternating pattern have recently been shown by several groups to adopt helical secondary structures in solution. The β-residue substitution pattern has a profound effect on the type of helix formed and the stability of the helical conformation. On the basis of two-dimensional NMR data, we have previously proposed that β-residues with a five-membered ring constraint promote two different types of α/β-peptide helix. The "11-helix" contains i,i+3 C=O⋯H-N hydrogen bonds between backbone amide groups; these hydrogen bonds occur in 11-atom rings. The α/β-peptide "14/15-helix" contains i,i+A C=O⋯H-N hydrogen bonds, which occur in alternating 14- and 15-atom rings. Here we provide crystallographic data for 14 α/β-peptides that form the 11-helix and/or the 14/15-helix. These results were obtained for a series of oligomers containing β-residues derived from (S,S)-trans-2- aminocyclopentanecarboxylic acid (ACPC) and α-residues derived from α-aminoisobutyric acid (Aib) or L-alanine (Ala). The crystallized α/β-peptides range in length from 4 to 10 residues. Nine of the α/β- peptides display the 11-helix in the solid state, three display the 14/15-helix, and two display conformations that contain both i,i+3 and i,i+4 C=O⋯H-N hydrogen bonds, but not bifurcated hydrogen bonds. Only 3 of the 14 crystal structures presented here have been previously described. These results suggest that longer α/β-peptides prefer the 14/15-helix over the 11-helix, a conclusion that is consistent with previously reported NMR data obtained in solution.

Original languageEnglish
Pages (from-to)6544-6550
Number of pages7
JournalJournal of the American Chemical Society
Volume130
Issue number20
DOIs
Publication statusPublished - 2008 May 21

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All Science Journal Classification (ASJC) codes

  • Catalysis
  • Chemistry(all)
  • Biochemistry
  • Colloid and Surface Chemistry

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