Deep learning-based template matching spike classification for extracellular recordings

In Yong Park, Junsik Eom, Hanbyol Jang, Sewon Kim, Sanggeon Park, Yeowool Huh, Dosik Hwang

Research output: Contribution to journalArticle

Abstract

We propose a deep learning-based spike sorting method for extracellular recordings. For analysis of extracellular single unit activity, the process of detecting and classifying action potentials called "spike sorting" has become essential. This is achieved through distinguishing the morphological differences of the spikes from each neuron, which arises from the differences of the surrounding environment and characteristics of the neurons. However, cases of high structural similarity and noise make the task difficult. And for manual spike sorting, it requires professional knowledge along with extensive time cost and suffers from human bias. We propose a deep learning-based spike sorting method on extracellular recordings from a single electrode that is effcient, robust to noise, and accurate. In circumstances where labelled data does not exist, we created pseudo-labels through principal component analysis and K-means clustering to be used for multi-layer perceptron training and built high performing spike classification model. When tested, our model outperformed conventional methods by 2.1% on simulation data of various noise levels, by 6.0% on simulation data of various clusters count, and by 1.7% on in-vivo data. As a result, we showed that the deep learning-based classification can classify spikes from extracellular recordings, even showing high classification accuracy on spikes that are diffcult even for manual classification.

Original languageEnglish
Article number301
JournalApplied Sciences (Switzerland)
Volume10
Issue number1
DOIs
Publication statusPublished - 2020 Jan 1

All Science Journal Classification (ASJC) codes

  • Materials Science(all)
  • Instrumentation
  • Engineering(all)
  • Process Chemistry and Technology
  • Computer Science Applications
  • Fluid Flow and Transfer Processes

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