Gene copy number change events at chromosome 20 and their association with recurrence in gastric cancer patients

Sang Hwa Yang, Min Young Seo, Ha Jin Jeong, Hei Cheul Jeung, Jihye Shin, Sang Chul Kim, Sung Hoon Noh, Hyuncheol Chung, SunYoung Rha

Research output: Contribution to journalArticle

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Abstract

Purpose: This study examined the gene copy number change events at chromosome 20 in gastric cancer, and their possible relationship with recurrence using cDNA microarray-based comparative genomic hybridization. Experimental Design: Thirty pairs of gastric tumor and normal gastric tissues were used in the cDNA microarray-based comparative genomic hybridization. The cDNA microarrays containing 17,000 sequence-verified human gene probes were used in a direct comparison design, where genomic DNAs from the normal and tumor tissues were labeled with fluorescent dyes Cy3 and Cy5, respectively, and cohybridized. Genes with log2 (Cy5/Cy3) ≥ 0.58 in at least one case were selected as the amplified genes. In order to search for the association between gene copy number changes and the recurrence status, patients were grouped according to their recurrence status. Gene selection between the two groups was done, and each patient was given a score based on the sum of the selected genes' ratios. Logistic regression analysis was carried out in order to determine if the score of a group of patients was correlated with a recurrence. Results: A group of genes including NCOA6, CYP24A1, PTPN1, and ZNF217 was amplified in gastric cancer. Another group of 39 genes, whose sum of copy number change levels was significantly associated with a poor prognosis for recurrence, was selected (P < 0.05). Conclusion: Ninety-six amplified genes at chromosome 20 of gastric cancer are reported. A scoring system based on gene copy changes at chromosome 20 can provide an independent patient grouping system that can distinguish patient recurrence status and survival.

Original languageEnglish
Pages (from-to)612-620
Number of pages9
JournalClinical Cancer Research
Volume11
Issue number2 I
Publication statusPublished - 2005 Jan 15

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Chromosomes, Human, Pair 20
Gene Dosage
Stomach Neoplasms
Recurrence
Genes
Oligonucleotide Array Sequence Analysis
Comparative Genomic Hybridization
Stomach
Fluorescent Dyes
Neoplasms
Research Design
Logistic Models
Regression Analysis

All Science Journal Classification (ASJC) codes

  • Oncology
  • Cancer Research

Cite this

Yang, S. H., Seo, M. Y., Jeong, H. J., Jeung, H. C., Shin, J., Kim, S. C., ... Rha, S. (2005). Gene copy number change events at chromosome 20 and their association with recurrence in gastric cancer patients. Clinical Cancer Research, 11(2 I), 612-620.
Yang, Sang Hwa ; Seo, Min Young ; Jeong, Ha Jin ; Jeung, Hei Cheul ; Shin, Jihye ; Kim, Sang Chul ; Noh, Sung Hoon ; Chung, Hyuncheol ; Rha, SunYoung. / Gene copy number change events at chromosome 20 and their association with recurrence in gastric cancer patients. In: Clinical Cancer Research. 2005 ; Vol. 11, No. 2 I. pp. 612-620.
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Yang, SH, Seo, MY, Jeong, HJ, Jeung, HC, Shin, J, Kim, SC, Noh, SH, Chung, H & Rha, S 2005, 'Gene copy number change events at chromosome 20 and their association with recurrence in gastric cancer patients', Clinical Cancer Research, vol. 11, no. 2 I, pp. 612-620.

Gene copy number change events at chromosome 20 and their association with recurrence in gastric cancer patients. / Yang, Sang Hwa; Seo, Min Young; Jeong, Ha Jin; Jeung, Hei Cheul; Shin, Jihye; Kim, Sang Chul; Noh, Sung Hoon; Chung, Hyuncheol; Rha, SunYoung.

In: Clinical Cancer Research, Vol. 11, No. 2 I, 15.01.2005, p. 612-620.

Research output: Contribution to journalArticle

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AU - Seo, Min Young

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AU - Noh, Sung Hoon

AU - Chung, Hyuncheol

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Yang SH, Seo MY, Jeong HJ, Jeung HC, Shin J, Kim SC et al. Gene copy number change events at chromosome 20 and their association with recurrence in gastric cancer patients. Clinical Cancer Research. 2005 Jan 15;11(2 I):612-620.