Genome sequence of Lysobacter dokdonensis DS-58T, a gliding bacterium isolated from soil in Dokdo, Korea

Min Jung Kwak, Soon Kyeong Kwon, Jung Hoon Yoon, Jihyun F. Kim

Research output: Contribution to journalArticle

2 Citations (Scopus)

Abstract

Lysobacter dokdonensis DS-58, belonging to the family Xanthomonadaceae, was isolated from a soil sample in Dokdo, Korea in 2011. Strain DS-58 is the type strain of L. dokdonensis. In this study, we determined the genome sequence to describe the genomic features including annotation information and COG functional categorization. The draft genome sequence consists of 25 contigs totaling 3,274,406 bp (67.24 % G + C) and contains 3,155 protein coding genes, 2 copies of ribosomal RNA operons, and 48 transfer RNA genes. Among the protein coding genes, 75.91 % of the genes were annotated with a putative function and 87.39 % of the genes were assigned to the COG category. In the genome of L. dokdonensis, a large number of genes associated with protein degradation and antibiotic resistance were detected.

Original languageEnglish
Article number123
JournalStandards in Genomic Sciences
Volume10
Issue number1
DOIs
Publication statusPublished - 2015 Dec 9

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Lysobacter
Korea
Soil
Genome
Bacteria
Xanthomonadaceae
Genes
Ribosomal RNA
Operon
Microbial Drug Resistance
Transfer RNA
Proteolysis
Proteins

All Science Journal Classification (ASJC) codes

  • Genetics

Cite this

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abstract = "Lysobacter dokdonensis DS-58, belonging to the family Xanthomonadaceae, was isolated from a soil sample in Dokdo, Korea in 2011. Strain DS-58 is the type strain of L. dokdonensis. In this study, we determined the genome sequence to describe the genomic features including annotation information and COG functional categorization. The draft genome sequence consists of 25 contigs totaling 3,274,406 bp (67.24 {\%} G + C) and contains 3,155 protein coding genes, 2 copies of ribosomal RNA operons, and 48 transfer RNA genes. Among the protein coding genes, 75.91 {\%} of the genes were annotated with a putative function and 87.39 {\%} of the genes were assigned to the COG category. In the genome of L. dokdonensis, a large number of genes associated with protein degradation and antibiotic resistance were detected.",
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Genome sequence of Lysobacter dokdonensis DS-58T, a gliding bacterium isolated from soil in Dokdo, Korea. / Kwak, Min Jung; Kwon, Soon Kyeong; Yoon, Jung Hoon; Kim, Jihyun F.

In: Standards in Genomic Sciences, Vol. 10, No. 1, 123, 09.12.2015.

Research output: Contribution to journalArticle

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