Genome snapshot of paenibacillus polymyxa ATCC 842T

Haeyoung Jeong, Jihyun F. Kim, Yon Kyoung Park, Seong Bin Kim, Changhoon Kim, Seung Hwan Park

Research output: Contribution to journalArticle

14 Citations (Scopus)

Abstract

Bacteria belonging to the genus Paenibacillus are facultatively anaerobic endospore formers and are attracting growing ecological and agricultural interest, yet their genome information is very limited. The present study surveyed the genomic features of P. polymyxa ATCC 842T using pulse-field gel electrophoresis of restriction fragments and sample genome sequencing of 1,747 reads (approximately 17.5% coverage of the genome). Putative functions were assigned to more than 60% of the sequences. Functional classification of the sequences showed a similar pattern to that of B. subtilis. Sequence analysis suggests nitrogen fixation and antibiotic production by P. polymyxa ATCC 842T, which may explain its plant growth-promoting effects.

Original languageEnglish
Pages (from-to)1650-1655
Number of pages6
JournalJournal of Microbiology and Biotechnology
Volume16
Issue number10
Publication statusPublished - 2006 Oct 1

Fingerprint

Genome
Paenibacillus
Nitrogen Fixation
Sequence Analysis
Electrophoresis
Gels
Anti-Bacterial Agents
Bacteria
Growth
Paenibacillus polymyxa

All Science Journal Classification (ASJC) codes

  • Biotechnology
  • Applied Microbiology and Biotechnology

Cite this

Jeong, H., Kim, J. F., Park, Y. K., Kim, S. B., Kim, C., & Park, S. H. (2006). Genome snapshot of paenibacillus polymyxa ATCC 842T. Journal of Microbiology and Biotechnology, 16(10), 1650-1655.
Jeong, Haeyoung ; Kim, Jihyun F. ; Park, Yon Kyoung ; Kim, Seong Bin ; Kim, Changhoon ; Park, Seung Hwan. / Genome snapshot of paenibacillus polymyxa ATCC 842T. In: Journal of Microbiology and Biotechnology. 2006 ; Vol. 16, No. 10. pp. 1650-1655.
@article{6c94d9e2203a46a2b22017859a8c0b78,
title = "Genome snapshot of paenibacillus polymyxa ATCC 842T",
abstract = "Bacteria belonging to the genus Paenibacillus are facultatively anaerobic endospore formers and are attracting growing ecological and agricultural interest, yet their genome information is very limited. The present study surveyed the genomic features of P. polymyxa ATCC 842T using pulse-field gel electrophoresis of restriction fragments and sample genome sequencing of 1,747 reads (approximately 17.5{\%} coverage of the genome). Putative functions were assigned to more than 60{\%} of the sequences. Functional classification of the sequences showed a similar pattern to that of B. subtilis. Sequence analysis suggests nitrogen fixation and antibiotic production by P. polymyxa ATCC 842T, which may explain its plant growth-promoting effects.",
author = "Haeyoung Jeong and Kim, {Jihyun F.} and Park, {Yon Kyoung} and Kim, {Seong Bin} and Changhoon Kim and Park, {Seung Hwan}",
year = "2006",
month = "10",
day = "1",
language = "English",
volume = "16",
pages = "1650--1655",
journal = "Journal of Microbiology and Biotechnology",
issn = "1017-7825",
publisher = "Korean Society for Microbiolog and Biotechnology",
number = "10",

}

Jeong, H, Kim, JF, Park, YK, Kim, SB, Kim, C & Park, SH 2006, 'Genome snapshot of paenibacillus polymyxa ATCC 842T', Journal of Microbiology and Biotechnology, vol. 16, no. 10, pp. 1650-1655.

Genome snapshot of paenibacillus polymyxa ATCC 842T. / Jeong, Haeyoung; Kim, Jihyun F.; Park, Yon Kyoung; Kim, Seong Bin; Kim, Changhoon; Park, Seung Hwan.

In: Journal of Microbiology and Biotechnology, Vol. 16, No. 10, 01.10.2006, p. 1650-1655.

Research output: Contribution to journalArticle

TY - JOUR

T1 - Genome snapshot of paenibacillus polymyxa ATCC 842T

AU - Jeong, Haeyoung

AU - Kim, Jihyun F.

AU - Park, Yon Kyoung

AU - Kim, Seong Bin

AU - Kim, Changhoon

AU - Park, Seung Hwan

PY - 2006/10/1

Y1 - 2006/10/1

N2 - Bacteria belonging to the genus Paenibacillus are facultatively anaerobic endospore formers and are attracting growing ecological and agricultural interest, yet their genome information is very limited. The present study surveyed the genomic features of P. polymyxa ATCC 842T using pulse-field gel electrophoresis of restriction fragments and sample genome sequencing of 1,747 reads (approximately 17.5% coverage of the genome). Putative functions were assigned to more than 60% of the sequences. Functional classification of the sequences showed a similar pattern to that of B. subtilis. Sequence analysis suggests nitrogen fixation and antibiotic production by P. polymyxa ATCC 842T, which may explain its plant growth-promoting effects.

AB - Bacteria belonging to the genus Paenibacillus are facultatively anaerobic endospore formers and are attracting growing ecological and agricultural interest, yet their genome information is very limited. The present study surveyed the genomic features of P. polymyxa ATCC 842T using pulse-field gel electrophoresis of restriction fragments and sample genome sequencing of 1,747 reads (approximately 17.5% coverage of the genome). Putative functions were assigned to more than 60% of the sequences. Functional classification of the sequences showed a similar pattern to that of B. subtilis. Sequence analysis suggests nitrogen fixation and antibiotic production by P. polymyxa ATCC 842T, which may explain its plant growth-promoting effects.

UR - http://www.scopus.com/inward/record.url?scp=33751055695&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=33751055695&partnerID=8YFLogxK

M3 - Article

VL - 16

SP - 1650

EP - 1655

JO - Journal of Microbiology and Biotechnology

JF - Journal of Microbiology and Biotechnology

SN - 1017-7825

IS - 10

ER -

Jeong H, Kim JF, Park YK, Kim SB, Kim C, Park SH. Genome snapshot of paenibacillus polymyxa ATCC 842T. Journal of Microbiology and Biotechnology. 2006 Oct 1;16(10):1650-1655.