In-depth analysis of site-specific N-glycosylation in vitronectin from human plasma by tandem mass spectrometry with immunoprecipitation

Heeyoun Hwang, Ju Yeon Lee, Hyun Kyoung Lee, Gun Wook Park, Hoi Keun Jeong, Myeong Hee Moon, Jin Young Kim, Jong Shin Yoo

Research output: Contribution to journalArticlepeer-review

24 Citations (Scopus)

Abstract

The characterization of site-specific microheterogeneity in glycoprotein is very important for understanding cell biology and disease processes. Vitronectin is well known to be a multifunctional glycoprotein in the blood and the extracellular matrix, which is related to hepatocellular carcinoma (HCC). Here, we systematically analyzed the site-specific N-glycopeptides of vitronectin in human plasma by tandem mass spectrometry combined with immunoprecipitation and hydrophilic interaction liquid chromatography (HILIC) enrichment. Vitronectin was purified with immunoprecipitation by monoclonal antibody from plasma and digested to tryptic N-glycopeptides.Then, enrichment with HILIC materials was used and followed by analysis with nano-LC/MS/MS. The sequences of N-glycopeptides were identified from the mass spectra by high-energy C-trap dissociation (HCD) and collision-induced dissociation (CID). In HCD mode, oxonium ions were used for recognizing glycopeptides and y ions for sequencing the peptide backbone. In CID mode, Y ions were used for characterizing their glycoforms. As a result, a total of 17 site-specific N-glycopeptides were completely identified in all of the three N-glycosylation sites of vitronectin in human plasma, including 12 N-glycopeptides first reported. Finally, we specifically found that three hybrid and four complex glycopeptides of triantennary forms with outer fucosylation increased in HCC human plasma.

Original languageEnglish
Pages (from-to)7999-8011
Number of pages13
JournalAnalytical and Bioanalytical Chemistry
Volume406
Issue number30
DOIs
Publication statusPublished - 2014 Nov 26

Bibliographical note

Funding Information:
Acknowledgments The research was supported by the Korea Health Technology R&D Project through the Korea Health Industry Development Institute (KHIDI), funded by the Ministry of Health & Welfare, Republic of Korea (grant number: HI13C2098); the research program through the Korea Basic Science Institute (grant number: D34413, T34750); and the Proteogenomic Research Program, through the National Research Foundation (NRF) funded by the Ministry of Science, ICT & Future Planning (NRF-2013M3A9B9044431).

Publisher Copyright:
© 2014 Springer-Verlag Berlin Heidelberg.

All Science Journal Classification (ASJC) codes

  • Analytical Chemistry
  • Biochemistry

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