Porphyrins conjugated to DNA as CD reporters of the salt-induced B to Z-DNA transition

Milan Balaz, Benjamin C. Li, Jay D. Steinkruger, George A. Ellestad, Koji Nakanishi, Nina Berova

Research output: Contribution to journalArticle

43 Citations (Scopus)

Abstract

The effects of of a bulk porphyrins on the salt-induced B- to Z-DNA transitions were analyzed. The sensitive detection of conformational changes associated with the B- to Z-DNA transition in the broad spectral region was achieved by circular dichroism (CD) spectroscopy. It was found that if the twist and distance were favorable, the porphyrin chromophore can serve as a real reporter of the B- to Z transition via Soret band CD signal. It was also found that a tetraarylporphyrin attached in the 5′- position of the studied oligodeoxynucleotide (ODN) enhanced the high salt concentration cooperative B-Z transition and stabilized the Z-form with a smaller helical twist with respect to the unmodified sequence.

Original languageEnglish
Pages (from-to)1865-1867
Number of pages3
JournalOrganic and Biomolecular Chemistry
Volume4
Issue number10
DOIs
Publication statusPublished - 2006 May 25

Fingerprint

Z-Form DNA
Porphyrins
Dichroism
Circular Dichroism
porphyrins
dichroism
deoxyribonucleic acid
Salts
Circular dichroism spectroscopy
salts
Oligodeoxyribonucleotides
DNA
Chromophores
Spectrum Analysis
chromophores
spectroscopy

All Science Journal Classification (ASJC) codes

  • Biochemistry
  • Physical and Theoretical Chemistry
  • Organic Chemistry

Cite this

Balaz, M., Li, B. C., Steinkruger, J. D., Ellestad, G. A., Nakanishi, K., & Berova, N. (2006). Porphyrins conjugated to DNA as CD reporters of the salt-induced B to Z-DNA transition. Organic and Biomolecular Chemistry, 4(10), 1865-1867. https://doi.org/10.1039/b603409h
Balaz, Milan ; Li, Benjamin C. ; Steinkruger, Jay D. ; Ellestad, George A. ; Nakanishi, Koji ; Berova, Nina. / Porphyrins conjugated to DNA as CD reporters of the salt-induced B to Z-DNA transition. In: Organic and Biomolecular Chemistry. 2006 ; Vol. 4, No. 10. pp. 1865-1867.
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abstract = "The effects of of a bulk porphyrins on the salt-induced B- to Z-DNA transitions were analyzed. The sensitive detection of conformational changes associated with the B- to Z-DNA transition in the broad spectral region was achieved by circular dichroism (CD) spectroscopy. It was found that if the twist and distance were favorable, the porphyrin chromophore can serve as a real reporter of the B- to Z transition via Soret band CD signal. It was also found that a tetraarylporphyrin attached in the 5′- position of the studied oligodeoxynucleotide (ODN) enhanced the high salt concentration cooperative B-Z transition and stabilized the Z-form with a smaller helical twist with respect to the unmodified sequence.",
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Balaz, M, Li, BC, Steinkruger, JD, Ellestad, GA, Nakanishi, K & Berova, N 2006, 'Porphyrins conjugated to DNA as CD reporters of the salt-induced B to Z-DNA transition', Organic and Biomolecular Chemistry, vol. 4, no. 10, pp. 1865-1867. https://doi.org/10.1039/b603409h

Porphyrins conjugated to DNA as CD reporters of the salt-induced B to Z-DNA transition. / Balaz, Milan; Li, Benjamin C.; Steinkruger, Jay D.; Ellestad, George A.; Nakanishi, Koji; Berova, Nina.

In: Organic and Biomolecular Chemistry, Vol. 4, No. 10, 25.05.2006, p. 1865-1867.

Research output: Contribution to journalArticle

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T1 - Porphyrins conjugated to DNA as CD reporters of the salt-induced B to Z-DNA transition

AU - Balaz, Milan

AU - Li, Benjamin C.

AU - Steinkruger, Jay D.

AU - Ellestad, George A.

AU - Nakanishi, Koji

AU - Berova, Nina

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AB - The effects of of a bulk porphyrins on the salt-induced B- to Z-DNA transitions were analyzed. The sensitive detection of conformational changes associated with the B- to Z-DNA transition in the broad spectral region was achieved by circular dichroism (CD) spectroscopy. It was found that if the twist and distance were favorable, the porphyrin chromophore can serve as a real reporter of the B- to Z transition via Soret band CD signal. It was also found that a tetraarylporphyrin attached in the 5′- position of the studied oligodeoxynucleotide (ODN) enhanced the high salt concentration cooperative B-Z transition and stabilized the Z-form with a smaller helical twist with respect to the unmodified sequence.

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