Abstract
We introduce a new bio-inspired operation called a site-directed deletion motivated from site-directed mutagenesis performed by enzymatic activity of DNA polymerase: Given two strings x and y, a site-directed deletion partially deletes a substring of x guided by the string y that specifies which part of a substring can be deleted. We study a few decision problems with respect to the new operation and examine the closure properties of the (iterated) site-directed deletion operations. We, then, define a site-directed deletion-closed (and -free) language L and investigate its decidability properties when L is regular or context-free.
| Original language | English |
|---|---|
| Title of host publication | Developments in Language Theory - 22nd International Conference, DLT 2018, Proceedings |
| Editors | Mizuho Hoshi, Shinnosuke Seki |
| Publisher | Springer Verlag |
| Pages | 219-230 |
| Number of pages | 12 |
| ISBN (Print) | 9783319986531 |
| DOIs | |
| Publication status | Published - 2018 Jan 1 |
| Event | 22nd International Conference on Developments in Language Theory, DLT 2018 - Tokyo, Japan Duration: 2018 Sep 10 → 2018 Sep 14 |
Publication series
| Name | Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) |
|---|---|
| Volume | 11088 LNCS |
| ISSN (Print) | 0302-9743 |
| ISSN (Electronic) | 1611-3349 |
Other
| Other | 22nd International Conference on Developments in Language Theory, DLT 2018 |
|---|---|
| Country | Japan |
| City | Tokyo |
| Period | 18/9/10 → 18/9/14 |
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All Science Journal Classification (ASJC) codes
- Theoretical Computer Science
- Computer Science(all)
Cite this
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Site-Directed Deletion. / Cho, Da Jung; Han, Yo Sub; Kim, Hwee; Salomaa, Kai.
Developments in Language Theory - 22nd International Conference, DLT 2018, Proceedings. ed. / Mizuho Hoshi; Shinnosuke Seki. Springer Verlag, 2018. p. 219-230 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 11088 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
TY - GEN
T1 - Site-Directed Deletion
AU - Cho, Da Jung
AU - Han, Yo Sub
AU - Kim, Hwee
AU - Salomaa, Kai
PY - 2018/1/1
Y1 - 2018/1/1
N2 - We introduce a new bio-inspired operation called a site-directed deletion motivated from site-directed mutagenesis performed by enzymatic activity of DNA polymerase: Given two strings x and y, a site-directed deletion partially deletes a substring of x guided by the string y that specifies which part of a substring can be deleted. We study a few decision problems with respect to the new operation and examine the closure properties of the (iterated) site-directed deletion operations. We, then, define a site-directed deletion-closed (and -free) language L and investigate its decidability properties when L is regular or context-free.
AB - We introduce a new bio-inspired operation called a site-directed deletion motivated from site-directed mutagenesis performed by enzymatic activity of DNA polymerase: Given two strings x and y, a site-directed deletion partially deletes a substring of x guided by the string y that specifies which part of a substring can be deleted. We study a few decision problems with respect to the new operation and examine the closure properties of the (iterated) site-directed deletion operations. We, then, define a site-directed deletion-closed (and -free) language L and investigate its decidability properties when L is regular or context-free.
UR - http://www.scopus.com/inward/record.url?scp=85053863333&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=85053863333&partnerID=8YFLogxK
U2 - 10.1007/978-3-319-98654-8_18
DO - 10.1007/978-3-319-98654-8_18
M3 - Conference contribution
AN - SCOPUS:85053863333
SN - 9783319986531
T3 - Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
SP - 219
EP - 230
BT - Developments in Language Theory - 22nd International Conference, DLT 2018, Proceedings
A2 - Hoshi, Mizuho
A2 - Seki, Shinnosuke
PB - Springer Verlag
ER -