Topology-driven trend analysis for drug discovery

Yanhua Lv, Ying Ding, Min Song, Zhiguang Duan

Research output: Contribution to journalArticlepeer-review

4 Citations (Scopus)

Abstract

The primary goal of the present study is to discover new drug treatments by topology analysis of drug associations and their therapeutic group network. To this end, we collected 19,869 papers dated from 1946 to 2015 that are related to autism treatment from PubMed. We extracted 145 drugs based on MeSH terms and their synonyms (the total number is 6624) within the same ATC classification hierarchy and used them to find drug associations in the collected datasets. We introduced a new topology-driven method that incorporates various network analyses including co-word network, clique percolation, weak component, pathfinding-based analysis of therapeutic groups, and detection of important drug interaction within a clique. The present study showed that the in-depth analysis of the drug relationships extracted from the literature-based network sheds new light on drug discovery research. The results also suggested that certain drugs could be repurposed for autism treatment in the future. In particular, the results indicated that the discovered four drugs such as Tocilizumab, Tacrolimus, Prednisone, and Sulfisoxazole are worthy of further study in laboratory experiments with formal assessment of possible effects on symptoms, which may provide psychologists, physicians, and researchers with data-based scientific hypotheses in autism-drug discovery.

Original languageEnglish
Pages (from-to)893-905
Number of pages13
JournalJournal of Informetrics
Volume12
Issue number3
DOIs
Publication statusPublished - 2018 Aug

Bibliographical note

Funding Information:
This research was supported by the Shanxi Provincial Education Department Research Program ( 2012221 and 2015BY36 ), China. This work was also partially supported by the Bio-Synergy Research Project (NRF-2013M3A9C4078138) of the Ministry of Science, ICT, and Future Planning through the National Research Foundation. We would like to thank the Web Science Lab team of Indiana University for the discussion about the present study. We also would like to thank Qi Yu and Yujia Zhai for their helps on the tools and figures of the paper.

Publisher Copyright:
© 2018 Published by Elsevier Ltd.

All Science Journal Classification (ASJC) codes

  • Computer Science Applications
  • Library and Information Sciences

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