Abstract
Aberrant methylation of promoter CpG islands in cancer is associated with silencing of tumor-suppressor genes, and agedependent hypermethylation in normal appearing mucosa may be a risk factor for human colon cancer. It is not known whether this age-related DNA methylation phenomenon is specific to human tissues. We performed comprehensive DNA methylation profiling of promoter regions in aging mouse intestine using methylated CpG island amplification in combination with microarray analysis. By comparing C57BL/6 mice at 3-mo-old versus 35-mo-old for 3627 detectable autosomal genes, we found 774 (21%) that showed increased methylation and 466 (13%) that showed decreased methylation. We used pyrosequencing to quantitatively validate the microarray data and confirmed linear age-related methylation changes for all 12 genomic regions examined. We then examined 11 changed genomic loci for age-related methylation in other tissues. Of these, three of 11 showed similar changes in lung, seven of 11 changed in liver, and six of 11 changed in spleen, though to a lower degree than the changes seen in colon. There was partial conservation between agerelated hypermethylation in human and mouse intestines, and Polycomb targets in embryonic stem cells were enriched among the hypermethylated genes. Our findings demonstrate a surprisingly high rate of hyper- and hypomethylation as a function of age in normal mouse small intestine tissues and a strong tissue-specificity to the process. We conclude that epigenetic deregulation is a common feature of aging in mammals.
| Original language | English |
|---|---|
| Pages (from-to) | 332-340 |
| Number of pages | 9 |
| Journal | Genome Research |
| Volume | 20 |
| Issue number | 3 |
| DOIs | |
| Publication status | Published - 2010 Mar 1 |
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All Science Journal Classification (ASJC) codes
- Genetics
- Genetics(clinical)
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Widespread and tissue specific age-related DNA methylation changes in mice. / Maegawa, Shinji; Hinkal, George; Kim, Hyun Soo; Shen, Lanlan; Zhang, Li; Zhang, Jiexin; Zhang, Nianxiang; Liang, Shoudan; Donehower, Lawrence A.; Issa, Jean Pierre J.
In: Genome Research, Vol. 20, No. 3, 01.03.2010, p. 332-340.Research output: Contribution to journal › Article
TY - JOUR
T1 - Widespread and tissue specific age-related DNA methylation changes in mice
AU - Maegawa, Shinji
AU - Hinkal, George
AU - Kim, Hyun Soo
AU - Shen, Lanlan
AU - Zhang, Li
AU - Zhang, Jiexin
AU - Zhang, Nianxiang
AU - Liang, Shoudan
AU - Donehower, Lawrence A.
AU - Issa, Jean Pierre J.
PY - 2010/3/1
Y1 - 2010/3/1
N2 - Aberrant methylation of promoter CpG islands in cancer is associated with silencing of tumor-suppressor genes, and agedependent hypermethylation in normal appearing mucosa may be a risk factor for human colon cancer. It is not known whether this age-related DNA methylation phenomenon is specific to human tissues. We performed comprehensive DNA methylation profiling of promoter regions in aging mouse intestine using methylated CpG island amplification in combination with microarray analysis. By comparing C57BL/6 mice at 3-mo-old versus 35-mo-old for 3627 detectable autosomal genes, we found 774 (21%) that showed increased methylation and 466 (13%) that showed decreased methylation. We used pyrosequencing to quantitatively validate the microarray data and confirmed linear age-related methylation changes for all 12 genomic regions examined. We then examined 11 changed genomic loci for age-related methylation in other tissues. Of these, three of 11 showed similar changes in lung, seven of 11 changed in liver, and six of 11 changed in spleen, though to a lower degree than the changes seen in colon. There was partial conservation between agerelated hypermethylation in human and mouse intestines, and Polycomb targets in embryonic stem cells were enriched among the hypermethylated genes. Our findings demonstrate a surprisingly high rate of hyper- and hypomethylation as a function of age in normal mouse small intestine tissues and a strong tissue-specificity to the process. We conclude that epigenetic deregulation is a common feature of aging in mammals.
AB - Aberrant methylation of promoter CpG islands in cancer is associated with silencing of tumor-suppressor genes, and agedependent hypermethylation in normal appearing mucosa may be a risk factor for human colon cancer. It is not known whether this age-related DNA methylation phenomenon is specific to human tissues. We performed comprehensive DNA methylation profiling of promoter regions in aging mouse intestine using methylated CpG island amplification in combination with microarray analysis. By comparing C57BL/6 mice at 3-mo-old versus 35-mo-old for 3627 detectable autosomal genes, we found 774 (21%) that showed increased methylation and 466 (13%) that showed decreased methylation. We used pyrosequencing to quantitatively validate the microarray data and confirmed linear age-related methylation changes for all 12 genomic regions examined. We then examined 11 changed genomic loci for age-related methylation in other tissues. Of these, three of 11 showed similar changes in lung, seven of 11 changed in liver, and six of 11 changed in spleen, though to a lower degree than the changes seen in colon. There was partial conservation between agerelated hypermethylation in human and mouse intestines, and Polycomb targets in embryonic stem cells were enriched among the hypermethylated genes. Our findings demonstrate a surprisingly high rate of hyper- and hypomethylation as a function of age in normal mouse small intestine tissues and a strong tissue-specificity to the process. We conclude that epigenetic deregulation is a common feature of aging in mammals.
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U2 - 10.1101/gr.096826.109
DO - 10.1101/gr.096826.109
M3 - Article
C2 - 20107151
AN - SCOPUS:77649240380
VL - 20
SP - 332
EP - 340
JO - Genome Research
JF - Genome Research
SN - 1088-9051
IS - 3
ER -